Transcription Factor
| Accessions: | Q8S4L4 (JASPAR 2024) |
| Names: | MADS-box transcription factor, MADS-box transcription factor MADS-RIN, Q8S4L4_SOLLC |
| Organisms: | Solanum lycopersicum |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 242 |
| Pfam Domains: | 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain) 79-173 K-box region |
| Sequence: (in bold interface residues) | 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEIALIIFSSRGKLYEFCSN 60 61 SSMSKTLERYHRYNYGTLEGTQTSSDSQNNYQEYLKLKTRVEMLQQSQRHLLGEDLGQLG 120 121 TKDLEQLERQLDSSLRQIRSTKTQHILDQLAELQQKEQSLTEMNKSLRIKLEELGVTFQT 180 181 SWHCGEQSVQYRHEQPSHHEGFFQHVNCNNTLPISYGYDNVQPENAAPSTHDATGVVPGW 240 241 ML |
| Interface Residues: | 3, 4, 15, 18, 19, 23, 124, 128, 131, 132, 135, 136 |
| 3D-footprint Homologues: | 1n6j_A, 1c7u_A, 7x1n_C, 1hbx_A, 1mnm_A, 7x5e_E |
| Binding Motifs: | MA1814.1 wwcTATTTTTGGgww MA1814.2 cTATTTTTGG |
| Binding Sites: | MA1814.1.1 / MA1814.1.2 MA1814.1.10 / MA1814.1.17 MA1814.1.11 / MA1814.1.19 MA1814.1.12 MA1814.1.13 MA1814.1.14 MA1814.1.15 MA1814.1.16 MA1814.1.17 MA1814.1.18 MA1814.1.19 MA1814.1.2 / MA1814.1.3 MA1814.1.20 MA1814.1.3 / MA1814.1.4 MA1814.1.4 / MA1814.1.5 MA1814.1.5 / MA1814.1.9 MA1814.1.10 / MA1814.1.6 MA1814.1.12 / MA1814.1.7 MA1814.1.14 / MA1814.1.8 MA1814.1.15 / MA1814.1.9 MA1814.1.1 MA1814.1.11 MA1814.1.13 MA1814.1.16 MA1814.1.18 MA1814.1.20 MA1814.1.6 MA1814.1.7 MA1814.1.8 MA1814.2.1 MA1814.2.10 MA1814.2.11 MA1814.2.12 / MA1814.2.18 / MA1814.2.8 MA1814.2.13 / MA1814.2.6 MA1814.2.14 / MA1814.2.15 MA1814.2.16 MA1814.2.17 MA1814.2.19 MA1814.2.2 MA1814.2.20 MA1814.2.3 MA1814.2.4 MA1814.2.5 MA1814.2.7 MA1814.2.9 |
| Publications: | Ito Y., Kitagawa M., Ihashi N., Yabe K., Kimbara J., Yasuda J., Ito H., Inakuma T., Hiroi S., Kasumi T. DNA-binding specificity, transcriptional activation potential, and the rin mutation effect for the tomato fruit-ripening regulator RIN.. Plant J. 55:212-223 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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