Transcription Factor

						

			
Accessions: T13128 (AthalianaCistrome v4_May2016), Q9C6U1 (JASPAR 2024)

			
Names: AT3G08500, MYB83, T13128;, AtMYB83, Myb-related protein 83, MYB83_ARATH, Transcription factor MYB83
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB
Length: 343
Pfam Domains:     32-79 Myb-like DNA-binding domain
    35-94 Myb-like DNA-binding domain
   85-129 Myb-like DNA-binding domain
   88-138 Myb-like DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MMMRKPDITTIRDKGKPNHACGGNNNKPKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIAR   60
  61 NAGLLRCGKSCRLRWINYLRPDLKRGSFSPQEEDLIFHLHSILGNRWSQIATRLPGRTDN  120
 121 EIKNFWNSTLKKRLKNNSNNNTSSGSSPNNSNSNSLDPRDQHVDMGGNSTSLMDDYHHDE  180
 181 NMMTVGNTMRMDSSSPFNVGPMVNSVGLNQLYDPLMISVPDNGYHQMGNTVNVFSVNGLG  240
 241 DYGNTILDPISKRVSVEGDDWFIPPSENTNVIACSTSNNLNLQALDPCFNSKNLCHSESF  300
 301 KVGNVLGIENGSWEIENPKIGDWDLDGLIDNNSSFPFLDFQVD
Interface Residues: 32, 67, 68, 69, 70, 72, 73, 76, 77, 78, 119, 120, 123, 124, 127, 128, 129
3D-footprint Homologues: 3osg_A, 2kdz_A, 7xur_A, 3zqc_A, 1mse_C, 5eyb_B, 6kks_A
Binding Motifs: M0500 tgwwrwGkTWGGTGr
M0565 gkkGTTGGTGr
MA1779.1 yCACCAACmmc
MA1779.2 CACCAACm
			
Publications: Sullivan AM, Arsovski AA, Lempe J, Bubb KL, Weirauch MT, Sabo PJ, Sandstrom R, Thurman RE, Neph S, Reynolds AP, Stergachis AB, Vernot B, Johnson AK, Haugen E, Sullivan ST, Thompson A, Neri FV 3rd, Weaver M, Diegel M, Mnaimneh S, Yang A, Hughes TR, Nemhauser JL, Queitsch C, Stamatoyannopoulos JA. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana 8:2015-2030 (Cell). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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