Transcription Factor
| Accessions: | T089603_1.02 (CISBP 1.02) |
| Names: | T089603_1.02;, UM00578 |
| Organisms: | Ustilago maydis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 626 |
| Pfam Domains: | 145-190 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MTLPPLPRISQTAPRPTCFLPLSLEGPNQQALSRKLSKLGIGSVCRDTLEEIFIEYLRKL 60 61 RRVYEAQYENAFVTWQQENLYEEAYDQAFRKLLNRLFAMHSQETWHMVLDEVSKVFRTDS 120 121 SLTVTQRDNASYEGAPLKTGRGHDSEAVRILEQAFKHSPNITPAEKFRLSEVTGLKPKQV 180 181 TIWFQNRRNRKGKKNLNVEPTESTQPDLSPSRHESPPPSSPSRDFTLSEKKRKSYGVLGR 240 241 SSPDCTDPDSDSPSSSLKKPRVSSVCSKLSDGSSSSYEYNDVFTQWGSPSSHSTSLSSES 300 301 SGLSDFESPRRPRNIFDYMRPRAMDGKAVAAMPRLTISAPQHPHCATASDQKSPFLYELQ 360 361 DSTFFDGTRLDLSGLQLNLGGFADDKDFRESVQMALSMSSSEQGSSRSASSSSWASTQAT 420 421 TDDDGWVDEEDFDSGFAACHTKPIDRTLLGQASLTPPDHCNSNTAPGQASRQEIFQAPCV 480 481 SGSHPANHSQTSADENPSISIPFSQSALFDSDSFGLDQLFESASIPAHLPSTLSHSQQQG 540 541 FGQMPFVDPNMQSFEEIEQDLDLDMTDIQEFLGGDIFASSLPGSQQSNGCVGSADANVQG 600 601 SNGGASIGEGILHMDFDPYSNSFSLA |
| Interface Residues: | 138, 178, 179, 181, 182, 185, 186, 189, 190, 193, 194 |
| 3D-footprint Homologues: | 1zq3_P, 5jlw_D, 2ld5_A, 1ig7_A, 1e3o_C, 1le8_A, 1au7_A, 7q3o_C, 6ryd_F, 8g87_X, 6a8r_A, 4xrm_B, 3a01_E, 1puf_A, 1du0_A, 6wig_A, 3rkq_B, 2hdd_A, 1jgg_B, 6es3_K, 4xrs_G, 3cmy_A, 1puf_B, 7psx_B, 5zfz_A, 4cyc_A, 5flv_I, 3l1p_A, 1fjl_B, 5zjt_E, 4qtr_D, 2r5y_A, 1nk2_P, 1b72_A, 5hod_A, 3lnq_A, 2h1k_B, 6m3d_C |
| Binding Motifs: | M0834_1.02 ccyaaTCaw |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.