Transcription Factor

						

			
Accessions: ERF1 (Athamap 20091028), ATERF1 (ArabidopsisPBM 20140210), T000663_1.02 (CISBP 1.02)

			
Names: AtERF1A, EREBP-1A, ERF1, Ethylene-responsive element-binding factor 1A, Ethylene-responsive transcription factor 1A, ATERF-1, T000663_1.02;
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, ArabidopsisPBM 20140210 2, CISBP 1.02 3
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]

2 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed]

3 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Uniprot: O80337
Notes: AP2/EREBP (ERF), experiment type:PBM, family:AP2
Length: 268
Pfam Domains:   147-197 AP2 domain
Sequence: 
(in bold interface residues)		   1 MSMTADSQSDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIKPVYGRNPSFSKL   60
  61 YPCFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESF  120
 121 AAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET  180
 181 AEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGAPKKRRTV  240
 241 AAGGGMDKGLTVKCEVVEVARGDRLLVL
Interface Residues: 152, 154, 155, 156, 160, 162, 164, 167, 172, 174
3D-footprint Homologues: 7wq5_A, 1gcc_A, 5wx9_A, 7et4_D
Binding Motifs: ERF1 AGCCGCCA
ATERF1 GGcGsCGsCs
ATERF1_2 ytGCCGGCar
M0028_1.02 smGCCgyCm
Binding Sites: ERF1_1
ERF1_2
			
Publications: Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M. 2000. Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell. 12:393-404. [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.