Transcription Factor

						

			
Accessions: T084301_1.02 (CISBP 1.02)

			
Names: GATA26, T084301_1.02;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:GATA
Length: 510
Pfam Domains:      7-41 GATA zinc finger
  291-367 Ubiquitin C-terminal hydrolase 37 receptor binding site
Sequence: 
(in bold interface residues)		   1 MGKQGPCYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPLHARADGDENDDH   60
  61 HRFQRMKSISLGNKNKEIKMLKRKAIQENIIIKRPVFEFSYGLKAAVIEEDASNRSSSGS  120
 121 AVSNSESCAQFSSADGSPSQSNAWDTTVPCKRRTCVGRPKSSSVEKLTKDLYNILQEQQS  180
 181 SCLSVSSEEDLLFENEMSMVSVEIGHGSVLMKNPHSFAREEESEASSLSSIENKSSISDA  240
 241 YSHSVKRVEIGAVRGSYYGGQTIKQEQFKRTKSQTERVHVLGSHGSPLCSIDLKDVFNFD  300
 301 EFIEQFTEEEQKKLMNLLPQIDSDDLPHSLRMMFESAQFKDNFSLFQQLIADGVFDVSSS  360
 361 SGAKLEEIRTFKKLALTDFNKSRLVESYNLLKEREKGTGDSVTTTSKSSIPNVPKNIVTI  420
 421 KRRYENQIQVKSESRGLMRSPKRVMKMKASHETENNVSCFRPRSLASVFAQEGGSAVFSY  480
 481 EGNCSSDQDLLLLDLPSNGSFPQAELLHQL
Interface Residues: 15, 16, 17, 18, 19, 30, 34, 35, 38, 39, 40, 41, 44, 45, 322, 324, 325, 326, 334, 357, 359, 360
3D-footprint Homologues: 7y3l_A, 8cuc_F, 3vd6_C, 4hc9_A, 4gat_A, 7y3m_I, 1g2f_F, 4m9v_C, 2oh2_B
Binding Motifs: M0767_1.02 ymGATcrwww
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.