Transcription Factor

						

			
Accessions: T100184_1.02 (CISBP 1.02)

			
Names: T100184_1.02;, unc-62
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain
Length: 490
Pfam Domains:   336-375 Homeobox KN domain
  337-375 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MGGAPTSTPMMHHEMGEAMKRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSS   60
  61 DVCSSASFKDDLNEFVRHTQENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCD  120
 121 NFCNRYVVCLKGKMPLDIVGDERASSSQPPMSPGSMGHLGHSSSPSMAGGATPMHYPPPY  180
 181 EPQSVPLPENAGVMGGHPMEGSSMAYSMAGMAAAAASSSSSSNQAGDHPLANGGTLHSTA  240
 241 GASQTLLPIAVSSPSTCSSGGLRQDSTPLSGETPMGHANGNSMDSISEAGDEFSVCGSND  300
 301 DGRDSVLSDSANGSQNGKRKVPKVFSKEAITKFRAWLFHNLTHPYPSEEQKKQLAKETGL  360
 361 TILQVNNWFINARRRIVQPMIDQNNRAGRSGQMNVCKNRRRNRSEQSPGPSPDSGSDSGA  420
 421 NYSPDPSSLAASTAMPYPAEFYMQRTMPYGGFPSFTNPAMPFMNPMMGFQVAPTVDALSQ  480
 481 QWVDLSAPHE
Interface Residues: 304, 317, 318, 319, 320, 321, 322, 363, 366, 367, 370, 371, 372, 373, 374, 375
3D-footprint Homologues: 5zfz_A, 2lkx_A, 6fqp_B, 3cmy_A, 1au7_A, 3d1n_M, 1zq3_P, 3rkq_B, 1puf_B, 8ik5_C, 1le8_A, 4j19_B, 7q3o_C, 8osb_E, 1mnm_C, 8bx1_A, 4xrs_G, 1k61_B, 8g87_X, 5hod_A, 6fqq_E, 1le8_B, 4xrm_B, 2d5v_B, 1fjl_B, 6a8r_A, 3lnq_A
Binding Motifs: M1123_1.02 accTgTcaw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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