Transcription Factor
| Accessions: | 6ama_Y (3D-footprint 20231221) |
| Names: | F2REK9_STRVP, Putative DNA-binding protein |
| Organisms: | strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745, Streptomyces venezuelae |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Length: | 57 |
| Pfam Domains: | 6-54 Helix-turn-helix domain 8-44 MerR family regulatory protein 9-52 MerR HTH family regulatory protein |
| Sequence: (in bold interface residues) | 1 PDAEPLLTPAEVATMFRVDPKTVTRWAKAGKLTSIRTLGGHRRYREAEVRALLAGIP |
| Interface Residues: | 9, 10, 19, 20, 21, 22, 24, 25, 28, 38, 39, 41, 42, 43 |
| 3D-footprint Homologues: | 7s03_A, 6amk_B, 6ama_L, 2zhg_A, 5c8e_C, 5i44_I, 2vz4_A, 7d3t_D |
| Binding Motifs: | 6ama_ABCDGHKLOPY TACCCGnnnTACCCnAnnTACCCnAnnTACCCnnnTTACCCGnnTTACCCGnnnTACCCGnnnTACCCGnnTTACCCGnnnTACCCnnnTTACCCG |
| Binding Sites: | 6ama_N 6ama_R |
| Publications: | Schumacher MA, den Hengst CD, Bush MJ, Le TBK, Tran NT, Chandra G, Zeng W, Travis B, Brennan RG, Buttner MJ. The MerR-like protein BldC binds DNA direct repeats as cooperative multimers to regulate Streptomyces development. Nat Commun 9:1139 (2018). [Pubmed] |
| Related annotations: | PaperBLAST |
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