Transcription Factor

						

			
Accessions: T138951_1.02 (CISBP 1.02)

			
Names: RFX1, T138951_1.02;
Organisms: Tetraodon nigroviridis
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:RFX
Length: 680
Pfam Domains:     4-169 RFX1 transcription activation region      
  206-277 RFX DNA-binding domain
Sequence: 
(in bold interface residues)		   1 LHSSESVSDSSSPPAVVQTGVPTQVVQQVQTAQQRSVVQATSQIAKTEPGTQLSVTSLQP   60
  61 VHITPEVQQQLTSVPVQHVYTNQVQYVEGTDSNYTTSTIRSSTFPYSETPLYTQTTATQY  120
 121 YEGQQTPGSQASTPGTPLTVSVTTGTTGGVSMFVAQPTSATAGGATVSGGAANNNQNYSH  180
 181 TARASPATVSITEGEESSVPSADKKKKKSYFKVQWLLDNYETAEGVSLPRSTLYCHYLLH  240
 241 CQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKAGSSLLRLMEDQQH  300
 301 LAMRQQPFSQKQRLKPVHKVEGMTNGTAAGAGQQQQQQQGTQVQQYQQFLDASRALPEFP  360
 361 DIDLQGKPLPDGVELEHIKSFQVLYREHCEAILDVMVNLQFTLVETLWKTFWRFSQSQAG  420
 421 DATLAVHDESEKRLPKSCLVLLCKYEPVLRWSRDCDNSLYQGLVEILIPDVLRPIPSALT  480
 481 QAIRNFAKSLESWLTNAMMNIPEEMVRIKVTSANAFAQTLRRYTSLNHLAQAARAVLQNT  540
 541 AQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKLTLQQQNSLEQWAAWLDGV  600
 601 VSQVLKPYQHSPAFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYY  660
 661 LIEHRVAQAKGETPIAVMGE
Interface Residues: 252, 256, 269, 273, 278
3D-footprint Homologues: 1dp7_P
Binding Motifs: M1533_1.02 GTtrCyadgg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.