Transcription Factor
| Accessions: | T060944_1.02 (CISBP 1.02) |
| Names: | NCU02666, T060944_1.02; |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 784 |
| Pfam Domains: | 281-303 Zinc finger, C2H2 type 295-319 Zinc-finger double domain 309-331 Zinc finger, C2H2 type 323-347 Zinc-finger double domain |
| Sequence: (in bold interface residues) | 1 MASEKGHLAATETPLATPATSQLAAASSAPEAPPTATSDAAFALAAEISRAKSLKRSREE 60 61 TPPSPDSVESSSPGDLSPSKIARLVGFARSPPPSLNGTADHDEERRRRDEEHHVESVAAS 120 121 ENLTHSPLADLMSGAPSGLARPADAPSVPPLSSLDAAADAAARALSAVTIPAPTAVTNEL 180 181 KGVNQPSAPSAPNLANASGEVVNSPVPMDVDSREDQRLYAPQPDAQMEPQDKPPSSLSYP 240 241 GVLPHGTPMSAPAPPSRGMSMPIPNAQGADVTPRSPGSKKHKCPYCSTEFTRHHNLKSHL 300 301 LTHSQEKPYVCSTCQMRFRRLHDLKRHSKLHTGEKPHICPKCDRKFARGDALARHSKGAG 360 361 GCAGRRPSMGNFGDEDYDSVNPTGADDSGLSNVMYEVAAEGELAAAEEERRRLSLPAIKA 420 421 QHVPGQTAPDGYAAHSSTYPPAGPRPGGLYPPNVDRGSTGPPTSPSVPNNHTPHTSISSI 480 481 PLSSGGTTMYSQTGMTESPKPLSPGTAQPTALSHDALTRQRAAPQQPHFRPAEQAPASGL 540 541 SLPSHGNTSAPASPATQQTAARGRNRASGGPPGPNRPGMVDGNNLFAAGEQGVWSYVQHM 600 601 EDKFKHLQSMVEATSQTNTELTAKLNSHEQHISVLNQNSAELVAKINTYEQHISSLNQTL 660 661 TNLTAKCTNHEQHISVLTAEVTALRQQQQHQHQQQHQLHHQPEHHHEENQEANLQEHLPQ 720 721 HQQEHQQGHQQQHQSEHQPEHQPEPQSEHQPGHQPEHQQQHHQPEHQQQHVPTETQEPPP 780 781 AAQQ |
| Interface Residues: | 253, 254, 256, 257, 258, 260, 269, 271, 274, 276, 289, 291, 292, 293, 294, 295, 297, 298, 315, 316, 319, 320, 321, 322, 323, 325, 326, 327, 330, 347, 348, 349, 350, 351, 352, 353, 354, 355 |
| 3D-footprint Homologues: | 2jpa_A, 2gli_A, 7eyi_G, 5kkq_D, 7n5w_A, 1tf3_A, 3uk3_C, 6jnm_A, 8cuc_F, 7y3l_A, 6ml4_A, 1mey_C, 6blw_A, 2drp_D, 6u9q_A, 5ei9_F, 2kmk_A, 5kl3_A, 7ysf_A, 1g2f_F, 5k5i_A, 8ssq_A, 1tf6_A, 7w1m_H, 5und_A, 2i13_A, 5k5l_F, 8ssu_A, 1ubd_C, 5v3j_F, 4x9j_A, 8gn3_A, 8h9h_G, 7y3m_I, 6e94_A, 6wmi_A, 2lt7_A, 6a57_A, 3g6t_A, 1f2i_J, 5yel_A, 7txc_E, 1llm_D, 2wbs_A, 4m9v_C, 5yj3_D |
| Binding Motifs: | M0469_1.02 tGTGGCkbag |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.