Transcription Factor
| Accessions: | T00200 (AthalianaCistrome v4_May2016), Q8VZQ2 (JASPAR 2024) |
| Names: | AT1G09540, MYB61, T00200;, AtMYB61, Myb-related protein 61, MYB61_ARATH, Transcription factor MYB61 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 366 |
| Pfam Domains: | 14-61 Myb-like DNA-binding domain 17-76 Myb-like DNA-binding domain 67-109 Myb-like DNA-binding domain 70-120 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MGRHSCCYKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60 61 LRPDLKRGAFSPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRG 120 121 IDPNTHKPISEVESFSDKDKPTTSNNKRSGNDHKSPSSSSATNQDFFLERPSDLSDYFGF 180 181 QKLNFNSNLGLSVTTDSSLCSMIPPQFSPGNMVGSVLQTPVCVKPSISLPPDNNSSSPIS 240 241 GGDHVKLAAPNWEFQTNNNNTSNFFDNGGFSWSIPNSSTSSSQVKPNHNFEEIKWSEYLN 300 301 TPFFIGSTVQSQTSQPIYIKSETDYLANVSNMTDPWSQNENLGTTETSDVFSKDLQRMAV 360 361 SFGQSL |
| Interface Residues: | 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 101, 102, 105, 106, 109, 110, 111 |
| 3D-footprint Homologues: | 3osg_A, 2kdz_A, 7xur_A, 6kks_A, 3zqc_A, 1mse_C, 5eyb_B |
| Binding Motifs: | M0499 yyyyACCwAMCwy M0531 yyyAmCwACCammhh MA1775.1 yyyyACCwAMCwy MA1775.2 yACCwAMC |
| Publications: | Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed] |
| Related annotations: | PaperBLAST |
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