Transcription Factor
| Accessions: | T057650_1.02 (CISBP 1.02) |
| Names: | lsy-2, T057650_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 339 |
| Pfam Domains: | 51-70 C2H2-type zinc finger 52-70 C2H2-type zinc finger 67-89 Zinc-finger double domain 80-102 Zinc finger, C2H2 type 80-102 C2H2-type zinc finger 80-102 C2H2-type zinc finger 94-117 Zinc-finger double domain 108-130 C2H2-type zinc finger 108-130 Zinc finger, C2H2 type 238-249 C2H2-type zinc finger 270-292 Zinc finger, C2H2 type 270-292 C2H2-type zinc finger 271-292 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MTHGSNQSVYHHNQHMDDSEMMMDEQDYSQYQMGFPEEDEMVEGMMTPRAVHQCNVCNKI 60 61 FVSYKGLQQHAVIHTDQKPFRCDICSKSFRFKSNLFEHRSVHTGFTPHACPYCGKTCRLK 120 121 GNLKKHLRTHVTTKEELEAAWRPFASNRRPPADIPDDAIVLRGAGGPYYTPPPRPKKKKL 180 181 GLGEPEHWVDKLRRGDLLPQVELEDKIRRLEDTIFNNMSLERWGNLFEIAKSIAFETHDC 240 241 PVCKSQFMTRMDCVSHHTLEHENHREGLEFFCEKCYRPFADEASYNQHMSYHTRVSSLIE 300 301 TGEIVPQPADPEILVPTNDEFQMLFGANFGQQMMEPQLI |
| Interface Residues: | 43, 62, 63, 64, 65, 66, 68, 69, 71, 72, 73, 75, 90, 91, 92, 93, 94, 96, 97, 98, 118, 119, 120, 121, 122, 123, 124, 125, 126, 129 |
| 3D-footprint Homologues: | 1ubd_C, 7n5w_A, 6jnm_A, 6ml4_A, 3uk3_C, 8cuc_F, 7y3l_A, 8gn3_A, 4x9j_A, 2gli_A, 1f2i_J, 5kl3_A, 5ei9_F, 1g2f_F, 7ysf_A, 7w1m_H, 6blw_A, 5k5i_A, 2kmk_A, 1llm_D, 5kkq_D, 8h9h_G, 7y3m_I, 6e94_A, 2lt7_A, 6a57_A, 2jpa_A, 5yj3_D, 2wbs_A, 1tf6_A, 7txc_E, 5v3j_F, 8ssq_A, 6u9q_A, 5yel_A, 2drp_D, 4m9v_C, 1tf3_A |
| Binding Motifs: | M0453_1.02 rwTACkGTAg |
| Related annotations: | PaperBLAST |
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