Transcription Factor
| Accessions: | T061510_1.02 (CISBP 1.02) |
| Names: | T061510_1.02;, ztf-6 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 480 |
| Pfam Domains: | 359-383 C2H2-type zinc finger 388-410 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MGPDTTSERVSEDLMQAVTCLKRVMVGMKSNGTDYVQEQTPSNSTTVICTLVKITGALER 60 61 CIESNKAMNDVLNGKMKCTTCGATSVGLLSDCHDSATSTTTTVSHRSSEEPPRRKPSAAG 120 121 GDHDDEELECSSIESRSIRSVSSSVHTSAEDDETNQTMMVPTDVADVINAIVAGTNGSSN 180 181 SNTTSSSKSPQEEEEEHDLVMKSILSTTTSTSNTKLELSEKLENPLQDTALLDQFLQASL 240 241 LGQTPTVTPASEENEEDKEQNAVLTSFLQILFANQQAGNAILDAGSSENDGSTSSSQPSP 300 301 PADPTASLDSLAMFESLLAESMNGNVLDANTSSADQKAAARKRKSTPMKVPKSENGAGYI 360 361 CPMDGCNKVFKEKGSVHRHFVTHIGMRFNCDKCKASYTQKHALMLHQKIHANPDAYQCRG 420 421 CGTNYTTQNGLRLHRQRNPACMEVSNALEFNTSLNTSISEALSGPLSKNSSPTKQMVSAP 480 |
| Interface Residues: | 344, 347, 371, 372, 373, 374, 375, 377, 378, 379, 380, 381, 384, 397, 398, 399, 400, 401, 402, 403, 404, 405, 406, 409, 425, 426, 427, 428, 429, 430, 431, 432, 433, 437, 450, 451, 452, 453 |
| 3D-footprint Homologues: | 5k5i_A, 1tf3_A, 7n5w_A, 6jnm_A, 7txc_E, 2kmk_A, 1f2i_J, 7ysf_A, 6ml4_A, 1tf6_A, 6blw_A, 5k5l_F, 1g2f_F, 6u9q_A, 4x9j_A, 6e94_A, 5kkq_D, 8gn3_A, 5ei9_F, 5kl3_A, 8h9h_G, 4m9v_C, 2lt7_A, 2jpa_A, 1ubd_C, 7w1m_H, 8cuc_F, 7y3l_A, 3uk3_C, 8ssq_A, 5yel_A, 2wbs_A, 1llm_D, 5yj3_D, 7y3m_I, 6a57_A, 5v3j_F |
| Binding Motifs: | M0494_1.02 rTTycAGmhw |
| Related annotations: | PaperBLAST |
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