Transcription Factor

Accessions: 1ynw_B (3D-footprint 20231221)
Names: Nuclear receptor subfamily 2 group B member 1, Retinoic acid receptor RXR-alpha, Retinoid X receptor alpha, RXRA_HUMAN
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: P19793
Length: 73
Pfam Domains: 1-69 Zinc finger, C4 type (two domains)
Sequence:
(in bold interface residues)
1 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 60
61 KCLAMGMKREAVQ
Interface Residues: 10, 11, 13, 14, 20, 21, 23, 24, 27, 28, 52
3D-footprint Homologues: 6fbq_A, 6l6q_B, 7wnh_D, 1lo1_A, 3g9m_B, 1a6y_A, 4oln_B, 7xv6_B, 2ff0_A, 1dsz_A, 4umm_E, 3cbb_A, 8cef_H, 4iqr_B, 2han_A, 1hcq_E, 8hbm_B, 5krb_G, 2han_B, 1kb2_B, 2a66_A, 2nll_B, 1lat_A, 5e69_A, 4hn5_B, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A, 5cbz_E, 4tnt_B
Binding Motifs: 1ynw_AB TGACCnnnnTGnCC
1ynw_B TGaCc
Binding Sites: 1ynw_C
1ynw_D
Publications: Shaffer P.L, Gewirth D.T. Structural analysis of RXR-VDR interactions on DR3 DNA. The Journal of steroid biochemistry and molecular biology 89-90:215-9 (2004). [Pubmed]
Related annotations: PaperBLAST

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