Transcription Factor

Accessions: Q9LZP8 (JASPAR 2024), T11942 (AthalianaCistrome v4_May2016), AtbZIP53 (EEADannot 2023-12-22)
Names: AtbZIP53, bZIP transcription factor 53, BZP53_ARATH, AT3G62420, bZIP53, T11942;, Q9LZP8;BZP53_ARATH;AT3G62420.1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2, EEADannot 2023-12-22 3
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
3 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP
Length: 146
Pfam Domains: 22-72 Basic region leucine zipper
25-83 bZIP transcription factor
Sequence:
(in bold interface residues)
1 MGSLQMQTSPESDNDPRYATVTDERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKN 60
61 DNAKITEQVDEASKKYIEMESKNNVLRAQASELTDRLRSLNSVLEMVEEISGQALDIPEI 120
121 PESMQNPWQMPCPMQPIRASADMFDC
Interface Residues: 25, 29, 32, 33, 34, 36, 37, 40, 41
3D-footprint Homologues: 4a12_B, 1gd2_G, 7x5e_E, 1dh3_C
Binding Motifs: M0196 / MA1341.1 dwwGmTGACGTGGCa
M0188 dwwGmTGACGTGKCa
EEAD0100 gwsACGTGGCA
EEAD0101 tGmTGACGTGkmm
EEAD0126 tGmCACGTsd
EEAD0127 cyrmgTCAkCa
EEAD0128 kMCACGTCAkc
EEAD0129 kmCACGTGkCa
EEAD0130 sACGTGKCa
MA1341.2 wGmTGACGTGGCa
Binding Sites: MA1341.1.1
MA1341.1.18
MA1341.1.15
MA1341.1.12 / MA1341.1.17
MA1341.1.13
MA1341.1.19
MA1341.1.14
MA1341.1.20
MA1341.1.3
MA1341.1.4
MA1341.1.6
MA1341.1.2 / MA1341.1.5
MA1341.1.8
MA1341.1.7
MA1341.1.9
MA1341.1.16
MA1341.1.11
MA1341.1.10
MA1341.2.13
MA1341.2.14
MA1341.2.12
MA1341.2.17
MA1341.2.11
MA1341.2.20
MA1341.2.19
MA1341.2.16
MA1341.2.18
MA1341.2.1
MA1341.2.15
MA1341.2.3
MA1341.2.6
MA1341.2.8
MA1341.2.4
MA1341.2.2 / MA1341.2.5
MA1341.2.7
MA1341.2.9
MA1341.2.10
Publications: Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.