Transcription Factor
| Accessions: | T134464_1.02 (CISBP 1.02) |
| Names: | nhr-3, T134464_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Nuclear receptor |
| Length: | 463 |
| Pfam Domains: | 52-119 Zinc finger, C4 type (two domains) 272-428 Ligand-binding domain of nuclear hormone receptor |
| Sequence: (in bold interface residues) | 1 MTDTQSPFSFAAALLQCGSPGQTFSMESLLKPELGEYSPSGENGIDGEESTICSVCCDEA 60 61 SGRHYGVVACFGCKGFFRRTVRAGKNYVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEP 120 121 DAIRPDRDKTGRQKNPRRNTEGSIKKVSVGSILGDLPCLNKFKDDSDDAATSPSSRADSA 180 181 PMDLRPSFIDESVLTTLTEIENIVIQLQDNFETNQQSLPPMGEAITKPSLIAARTLLNFN 240 241 GAKGVADANCVSSNLRRMIVFTFDYINTLRPIADLHPSEKLVIARSIISPFCILFCGYQS 300 301 VAIEAPEHDSIYLPSGHKLPASQLLFTKDSDQKKYILLENKADNVRRNMTEMIIQQLRRL 360 361 NVTKTEMVALKAIMALDHNVKGLSAESCELLVVARESVQNALFSHLIATFGTAEATSRFA 420 421 HLLLLIASATRVAYSLSSFFQLSRDVNYEIDYVLEELLFLDRI |
| Interface Residues: | 61, 62, 64, 65, 71, 72, 74, 75, 78, 79, 103, 125, 127, 129, 132, 134 |
| 3D-footprint Homologues: | 6fbq_A, 7wnh_D, 6l6q_B, 3g9m_B, 1a6y_A, 1lo1_A, 4oln_B, 2han_B, 1kb2_B, 2a66_A, 8hbm_B, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 1dsz_A, 4umm_E, 3cbb_A, 7xvn_C, 4iqr_B, 2han_A, 1hcq_E, 8cef_H, 5krb_G, 5cbz_E, 4tnt_B, 5e69_A, 4hn5_B, 8rm6_A, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A |
| Binding Motifs: | M1473_1.02 wtTgatcttt |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.