Transcription Factor
| Accessions: | T049220_1.02 (CISBP 1.02) |
| Names: | T049220_1.02;, Zic5 |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 622 |
| Pfam Domains: | 439-462 Zinc-finger double domain 450-474 C2H2-type zinc finger 450-474 Zinc finger, C2H2 type 466-493 Zinc-finger double domain 480-504 C2H2-type zinc finger 510-534 C2H2-type zinc finger 510-534 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MMEPPLSKRNPPALRLADLATAQAQQLQNMTGFPVLVGPPAHSQRRAVAMHLHPRDLGTD 60 61 PGVASTALGPEHMAQASGQGPCPPSQGLPGLSQVPAPAARSVASGTHPGARTHPDGGGSS 120 121 GAQASAPPPPAPPLPPSQSSSPPPPPPPPPALSGYTATNSGGGSSSGKGHSRDFVLRRDL 180 181 SATAPAAAMHGAPLGGEQRSGSSSPQHPTPPPHPAGMFISASGTYAGRDGGGSALFPALH 240 241 DSPGAPGGHPLNGQMRLGLAAAAAAAAELYGRAEPPFAPRSGDAHYGAVAAAAAAALHGY 300 301 GAVNLNLNLAAAAAAAAAAGPGPHLQHHAPPPAPPPAPAPHPHHPHLPGAAGAFLRYMRQ 360 361 PIKRELICKWLDPEELAGPPASADSGVKPCSKTFGTMHELVNHVTVEHVGGPEQSSHVCF 420 421 WEDCPREGKPFKAKYKLINHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPF 480 481 KCEFDGCDRKFANSSDRKKHSHVHTSDKPYYCKIRGCDKSYTHPSSLRKHMKIHCKSPPP 540 541 SPGALGYSSVGTPVGDPLSPVLDPTRSRSSTLSPQVTNLNEWYVCQASGAPSHLHTPSSN 600 601 GTTSESEDEEMYGNPEVMRTIH |
| Interface Residues: | 396, 398, 399, 402, 426, 428, 432, 433, 434, 435, 436, 438, 439, 441, 442, 443, 445, 462, 463, 464, 465, 466, 468, 469, 470, 492, 493, 494, 495, 496, 497, 498, 499, 500, 502, 503, 523, 524, 525, 526, 527, 528, 529 |
| 3D-footprint Homologues: | 5v3j_F, 1ubd_C, 7w1m_H, 7n5w_A, 1tf3_A, 1tf6_A, 6ml4_A, 4x9j_A, 8gn3_A, 5kkq_D, 5ei9_F, 2kmk_A, 2gli_A, 1g2f_F, 8h9h_G, 7eyi_G, 2i13_A, 6e94_A, 7ysf_A, 6wmi_A, 5k5i_A, 5und_A, 2lt7_A, 2jpa_A, 7y3l_A, 3uk3_C, 6jnm_A, 8cuc_F, 1llm_D, 6blw_A, 6u9q_A, 1mey_C, 7txc_E, 5kl3_A, 2drp_D, 1f2i_J, 8ssq_A, 4m9v_C, 7y3m_I, 6a57_A, 5k5l_F, 2wbs_A, 5yel_A, 5yj3_D |
| Binding Motifs: | M0422_1.02 syrGGggGyc |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.