Transcription Factor
| Accessions: | T008735_1.02 (CISBP 1.02) |
| Names: | GSVIVG00033765001, T008735_1.02; |
| Organisms: | Vitis vinifera |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:AT hook |
| Length: | 324 |
| Pfam Domains: | 39-48 AT hook motif 77-86 AT hook motif 107-224 Domain of unknown function (DUF296) |
| Sequence: (in bold interface residues) | 1 MERSLGGGDDGGGVGGNVGGRISGGGGGGSGSFDLLGRKKRGRPRKYDADGNLRLSYAVS 60 61 PPPGFTLSSPSSDFSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDV 120 121 ASKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVSDSG 180 181 GARSRTGGLSVSLAGPDGRVIGGGIAGILTAAGPIQIVVGSFMPNGYKTHKRKHHREPTT 240 241 TSIIPPAPDTVTAARPISQAAPEVGPCLNSTSPSHGQSHGEADDSVNNKQISNVISLQSA 300 301 AWNGSEHKSEQRPSPDINLTVPSE |
| Interface Residues: | 32, 34, 36, 48, 54, 65, 66, 69, 88, 92 |
| 3D-footprint Homologues: | 5t2o_A, 2gzk_A |
| Binding Motifs: | M0136_1.02 ryrrrwwwww |
| Related annotations: | PaperBLAST |
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