Transcription Factor
| Accessions: | T074919_1.02 (CISBP 1.02) |
| Names: | PASA_GEN_2600044, T074919_1.02; |
| Organisms: | Daphnia pulex |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:CxxC |
| Length: | 1269 |
| Pfam Domains: | 48-181 Cytosine specific DNA methyltransferase replication foci domain 294-337 CXXC zinc finger domain 409-534 BAH domain 631-757 BAH domain 796-1248 C-5 cytosine-specific DNA methylase |
| Sequence: (in bold interface residues) | 1 MISFPRFDSPDLKYFPGPPADSIEEIIALTDPSLSLFTGEEEVMSELDQRPILKLTQFGI 60 61 YDEPGHLCHLDGGAIEANHLLFAYGYVKPVWNDNPGVEGGIATKEIGPINEWFISGFDGG 120 121 EKAIMCFATSYADYYLMSASELYEPIMNELEEKIFLSKTVIELLIEDDNAEYEDLLTRLQ 180 181 NSLMPNGSRVSEDSLLRYAEFVCDRVYHFDAAGAEDEPPLILSPCMRTLIQLSGITLGKR 240 241 RATRKLEKRRQPKAKKGPNWTKATTTPLVGYVFESFFRDQMEQGEDKFGPTSAPRRTRCG 300 301 ICEACQQTDCGKCNFCRDMVKFGGSGRSKQSCVLRKCPNRAVQVADDDDELDAVLDTEIE 360 361 VVSLDVDHKKPVKRHAYKIEWDGPELKEVDDLTFYSAAIVNGDMRVFAGGHVTIEPDDPS 420 421 IPMYIAEVIALWEDGKSGEQFLHARWFCRGTDTVLGETCDDPRELVLIEDCEDLLLSAVV 480 481 KVVNVKYKPVDPVKWKAEGGSDDPSLFQSEEDHSDTTFWYRYLYHGRTGRFEDPPECPDV 540 541 VNNIKGCPCCDRLDVIRQRDFAKLGNKLDSGGFDSVTWHELDVKVGEAVFLEPGAYAMRG 600 601 PDGSIVKKEKIDPEEDDIFGVDYDDEYYPEKYRKTDNIKGSNNDTPDPFCIGYVVGIAYN 660 661 GILHNNLNAREVCLKVKRIYRPADTHLGRDAGFRSDWNLVYWSDEIHKLELNKVVDKCVL 720 721 VCSTAIDEPIEEFVRGGPNRMYFNKAYNPAEREFEPPPVEAERIGSSSKGKGGKSLKSAK 780 781 SIQPTYPSYPKIEPLKTLDIFAGCGGLSEGLHQSGVAKTYWAIECEPTAAQAFRLNNPDA 840 841 AVFTDDCNTILKMAIDGQLEQNGQVLPPKDGVELLCGGPPCQGFSGMNRFNSRQYSSFRN 900 901 SLIVSYLSYCDYYRPRFFILENVRNFVSFKRNMVLKLTMRCLVRMGYQCTFGVLQAGNYG 960 961 VSQTRRRAFIFAAAPGEKLPLYPEPTHVFSRRGCQLSVAVGRDKFYSNCRWLLSAPYRTV 1020 1021 TVRDAMSDLPEIPNGAKQEEISYGGDPQSHFQRWMRGTDSEQSSVLRDHISKEMAPLVEA 1080 1081 RIAFIPSKPGSDWRDLPNTEVRLKDGVMTVKLRYTHEDKNGRSLSGAMRGVCSCAEGRQC 1140 1141 DPLDKQHNTLIPWCLPHTGNRHNNWAGLYGRLEWDGFFSTTITNPEPMGKQGRVLHPEQH 1200 1201 RVVSVRECARSQGFPDSYRFFGNITDKHRQVGNAVPPPLARAIGLEIHKCVYEGDCKKKK 1260 1261 DEPPTIVQC |
| Interface Residues: | 326, 329, 330, 639, 770, 774, 778, 878, 881, 886, 887, 889, 890, 891, 892, 921, 922, 923, 965, 967, 992, 1094, 1154, 1155, 1162, 1163, 1165, 1186, 1188, 1190, 1191 |
| 3D-footprint Homologues: | 3qmd_A, 7xi9_A, 7l4c_A, 8c59_A, 5ciy_A, 2o5c_B, 6x9j_A |
| Binding Motifs: | M0618_1.02 wthkCGg |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.