Transcription Factor
| Accessions: | T075525_1.02 (CISBP 1.02), Q9FM03 (JASPAR 2024), T23263 (AthalianaCistrome v4_May2016) |
| Names: | DOF5.6, T075525_1.02;, AtDOF5.6, Dof zinc finger protein DOF5.6, DOF56_ARATH, Protein HIGH CAMBIAL ACTIVITY 2, Protein PHLOEM EARLY DOF HCA2, At5g62940, T23263; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Dof, ecotype:Col-0, experiment type: DAP-seq, family:C2C2-DOF |
| Length: | 372 |
| Pfam Domains: | 70-129 Dof domain, zinc finger |
| Sequence: (in bold interface residues) | 1 MGLTSLQVCMDSDWLQESESSGGSMLDSSTNSPSAADILAACSTRPQASAVAVAAAALMD 60 61 GGRRLRPPHDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGG 120 121 GCRKNKKPSSSNSSSSTSSGKKPSNIVTANTSDLMALAHSHQNYQHSPLGFSHFGGMMGS 180 181 YSTPEHGNVGFLESKYGGLLSQSPRPIDFLDSKFDLMGVNNDNLVMVNHGSNGDHHHHHN 240 241 HHMGLNHGVGLNNNNNNGGFNGISTGGNGNGGGLMDISTCQRLMLSNYDHHHYNHQEDHQ 300 301 RVATIMDVKPNPKLLSLDWQQDQCYSNGGGSGGAGKSDGGGYGNGGYINGLGSSWNGLMN 360 361 GYGTSTKTNSLV |
| Interface Residues: | 80, 81, 84, 111 |
| 3D-footprint Homologues: | 7ysf_A |
| Binding Motifs: | M0657_1.02 vawAAmGt MA0983.1 vawAAmGt M0244 raaaaaarrAAAAAGtwrawa MA0983.2 AAmG |
| Binding Sites: | MA0983.1.1 MA0983.1.10 MA0983.1.11 MA0983.1.12 MA0983.1.13 MA0983.1.14 MA0983.1.15 MA0983.1.16 MA0983.1.17 MA0983.1.18 MA0983.1.19 MA0983.1.2 MA0983.1.20 MA0983.1.3 MA0983.1.4 MA0983.1.5 MA0983.1.6 MA0983.1.7 MA0983.1.8 MA0983.1.9 MA0983.2.15 MA0983.2.11 / MA0983.2.7 MA0983.2.16 MA0983.2.8 MA0983.2.1 MA0983.2.10 MA0983.2.12 MA0983.2.13 MA0983.2.14 MA0983.2.17 MA0983.2.18 MA0983.2.19 MA0983.2.2 MA0983.2.20 / MA0983.2.3 MA0983.2.4 MA0983.2.5 MA0983.2.6 MA0983.2.9 |
| Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] |
| Related annotations: | PaperBLAST |
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