Transcription Factor
| Accessions: | T057655_1.02 (CISBP 1.02) |
| Names: | klf-3, T057655_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 315 |
| Pfam Domains: | 230-254 C2H2-type zinc finger 246-268 Zinc-finger double domain 260-284 C2H2-type zinc finger 260-284 Zinc finger, C2H2 type 277-300 Zinc-finger double domain 290-312 C2H2-type zinc finger 290-312 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MLKMEQSAPPRYEEDWADVYEFIERDSSRKNVPAIEAIERRLAFSPLITPNPGAKQFAPI 60 61 HVPGREPPRMLLPPTPHFQAPFSPHPPPVQQVPSYSPPHAPPSYETYPEVYYPPHIICNP 120 121 YDVPTTSDRNPPYYTEVTTVSAVTLHSMTPPTHKIETPPSSPENSFGPLASQLPAIKMEI 180 181 PMHPLPHNGELDSTRSSPSSTTSSERSPLQRKSRIESNKRNPTDKKFVVHACTYPGCFKK 240 241 YSKSSHLKAHERTHSGEKPFVCKWQNCSWKFARSDELTRHMRKHTGDKPFRCSLCDRNFA 300 301 RSDHLSLHMKRHSTI |
| Interface Residues: | 164, 165, 168, 169, 172, 178, 179, 182, 197, 198, 201, 204, 210, 211, 213, 214, 242, 243, 244, 245, 246, 248, 249, 251, 252, 255, 272, 273, 274, 275, 276, 278, 279, 280, 300, 301, 302, 303, 304, 305, 306, 307, 308, 311 |
| 3D-footprint Homologues: | 5j0n_F, 2i13_A, 6ml4_A, 5v3j_F, 7n5w_A, 1tf3_A, 6jnm_A, 8cuc_F, 1tf6_A, 4x9j_A, 6blw_A, 1ubd_C, 6u9q_A, 5ei9_F, 1mey_C, 5kl3_A, 7ysf_A, 6wmi_A, 2kmk_A, 2gli_A, 1g2f_F, 7eyi_G, 8h9h_G, 5kkq_D, 6e94_A, 8ssq_A, 7w1m_H, 5und_A, 2lt7_A, 8ssu_A, 6a57_A, 2jpa_A, 5k5i_A, 7y3l_A, 8gn3_A, 1llm_D, 2wbs_A, 5yel_A, 7txc_E, 3uk3_C, 2drp_D, 1f2i_J, 4m9v_C, 7y3m_I, 5yj3_D |
| Binding Motifs: | M0456_1.02 wGGGCGkgg |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.