Transcription Factor
| Accessions: | T06028 (AthalianaCistrome v4_May2016), Q9MA75 (JASPAR 2024) |
| Names: | AT1G43700, T06028;, VIP1, AtbZIP51, AtVIP1, bZIP protein 51, bZIP transcription factor 51, Protein SULPHATE UTILIZATION EFFICIENCY 3, Transcription factor VIP1, VIP1_ARATH, VirE2-interacting protein 1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP |
| Length: | 341 |
| Pfam Domains: | 194-245 Basic region leucine zipper 196-254 bZIP transcription factor |
| Sequence: (in bold interface residues) | 1 MEGGGRGPNQTILSEIEHMPEAPRQRISHHRRARSETFFSGESIDDLLLFDPSDIDFSSL 60 61 DFLNAPPPPQQSQQQPQASPMSVDSEETSSNGVVPPNSLPPKPEARFGRHVRSFSVDSDF 120 121 FDDLGVTEEKFIATSSGEKKKGNHHHSRSNSMDGEMSSASFNIESILASVSGKDSGKKNM 180 181 GMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQV 240 241 TMLQRGTSELNTENKHLKMRLQALEQQAELRDALNEALRDELNRLKVVAGEIPQGNGNSY 300 301 NRAQFSSQQSAMNQFGNKTNQQMSTNGQPSLPSYMDFTKRG |
| Interface Residues: | 204, 207, 208, 211, 212 |
| 3D-footprint Homologues: | 1dh3_C |
| Binding Motifs: | M0221 wTGmCAGCTGkh M0227 wdkmCAGCTGkCAw MA1803.1 wTGmCAGCTGkmhw MA1803.2 TGmCAGCTGk |
| Publications: | Lacroix B, Citovsky V. Characterization of VIP1 activity as a transcriptional regulator in vitro and in planta. Sci Rep : (2013;3:2440.). [Pubmed] |
| Related annotations: | PaperBLAST |
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