Transcription Factor
| Accessions: | UP00476A (UniPROBE 20160601) |
| Names: | Ylr278c |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | Zinc-cluster protein; GFP-fusion protein localizes to the nucleus; mutant shows moderate growth defect on caffeine; has a prion-domain like fragment that increases frequency of [URE3]; YLR278C is not an essential gene |
| Length: | 39 |
| Pfam Domains: | 1-31 Fungal Zn(2)-Cys(6) binuclear cluster domain |
| Sequence: (in bold interface residues) | 1 RSCLLCRRRKQRCDHKLPSCTACLKAGIKCVQPSKYSSS |
| Interface Residues: | 9, 10, 11, 35 |
| 3D-footprint Homologues: | 1hwt_C, 1pyi_A, 6o19_A, 2er8_C, 7uik_T, 3coq_A, 6gys_C, 1zme_D, 1d66_B |
| Binding Motifs: | UP00476A_1 / UP00476A_2 ghskybaAACTCCGrvyckggs UP00476A_3 CGGAgTCCG |
| Binding Sites: | AAACTCCG AACTCCGA AACTCCGC AACTCCGG AACTCCGT AAGTCCGA AATCTCCG ACTCCGAA ACTCCGAT ACTCCGGA ATACTCCG ATCCGGAG ATCTCCGG CAACTCCG CCGGAGAA CGGAGATA CGGAGTTA CGGAGTTC TCCGGAGA CCGGAGTA |
| Publications: | Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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