Transcription Factor

						

			
Accessions: T107601_1.02 (CISBP 1.02)

			
Names: Q1PS65_CHICK, T107601_1.02;
Organisms: Gallus gallus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:IRF
Length: 454
Pfam Domains:     7-115 Interferon regulatory factor transcription factor
  211-395 Interferon-regulatory factor 3
Sequence: 
(in bold interface residues)		   1 MALHPRRVRLKPWLVAQVDSGMYPGLIWLNREAKRFQIPWKHATRHSPQHEEENTIFKAW   60
  61 AVETGKYQEGVDEPDPAKWKAQLRCALNKSREFNLMYDGTQEVPMNPVKIYEVCDTIINP  120
 121 GSTGSAPWDEKENDLDEDEEEELNPSQHVPIQETFPFLNINDSPMAPASAENCSPEAVWP  180
 181 KNEPLDMEMPPTALQHDFFSSPELWISSLPMTDLEIKFEYRGKETGQTTTVSNPQGCRLF  240
 241 YGELGPMPDQEELFGPINLEQVRFPGTEQITNEKQKIFTSRLLDVMDRGLILEVSGHAIY  300
 301 AVRLCQCKVYWSGPCAPSATTPNLIERQKKVKLFCLETFLSELIAHQKGQIEKQPPFEIY  360
 361 FCFGEEWPDGKPRERKLIVVQVIPVVARMIYEMFSGDFTRSFDSGSVRLQISTPDIKDNI  420
 421 VAHLKQLYRLLQTHQEGWPMQAPTMHMAQPLPAQ
Interface Residues: 42, 44, 77, 81, 82, 84, 85, 86, 88, 89
3D-footprint Homologues: 2o61_A, 8hcm_A, 2pi0_B, 1if1_B, 2irf_L, 7oot_B, 8hcl_A
Binding Motifs: M1260_1.02 wycCaAAwwt
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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