Transcription Factor
| Accessions: | T084286_1.02 (CISBP 1.02), T02891 (AthalianaCistrome v4_May2016) |
| Names: | T084286_1.02;, TIFY2A, AT1G51600, T02891;, ZML2 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, AthalianaCistrome v4_May2016 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:GATA, ecotype:Col-0, experiment type: DAP-seq, family:C2C2-GATA |
| Length: | 302 |
| Pfam Domains: | 78-111 tify domain 146-171 Divergent CCT motif 147-190 CCT motif 223-258 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 MDDLHGSNARMHIREAQDPMHVQFEHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIP 60 61 SHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAP 120 121 PGLGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQ 180 181 RNKGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGP 240 241 AGPRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQIMITVANDISN 300 301 SQ |
| Interface Residues: | 165, 172, 176, 179, 181, 185, 186, 234, 235, 236, 237, 238, 248, 252, 253, 256 |
| 3D-footprint Homologues: | 7cvq_F, 7c9o_A, 7cvo_A, 1gat_A, 4hc9_A, 3vd6_C, 4gat_A, 3dfx_B |
| Binding Motifs: | M0760_1.02 waGATsd M0296 CATCATCATCATCATCATC |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.