Transcription Factor
| Accessions: | T03869 (AthalianaCistrome v4_May2016), Q9SA47 (JASPAR 2024) |
| Names: | AT1G16490, MYB58, T03869;, AtMYB58, Myb-related protein 58, MYB58_ARATH, Transcription factor MYB58 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 274 |
| Pfam Domains: | 16-63 Myb-like DNA-binding domain 19-78 Myb-like DNA-binding domain 69-114 Myb-like DNA-binding domain 72-122 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MGKGRAPCCDKTKVKRGPWSHDEDLKLISFIHKNGHENWRSLPKQAGLLRCGKSCRLRWI 60 61 NYLRPDVKRGNFSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIKNVWHTHLKKRLSS 120 121 ETNLNADEAGSKGSLNEEENSQESSPNASMSFAGSNISSKDDDAQISQMFEHILTYSEFT 180 181 GMLQEVDKPELLEMPFDLDPDIWSFIDGSDSFQQPENRALQESEEDEVDKWFKHLESELG 240 241 LEENDNQQQQQQHKQGTEDEHSSSLLESYELLIH |
| Interface Residues: | 51, 52, 53, 54, 56, 57, 61, 62, 103, 104, 107, 108, 111, 112, 113 |
| 3D-footprint Homologues: | 2kdz_A, 7xur_A, 3zqc_A, 1mse_C, 6kks_A, 3osg_A |
| Binding Motifs: | M0497 ddddwddkGKTWGGTGrrrcw M0523 drkGKTWGGTRraac MA2042.1 / UN0367.1 whytyCACCAACCmcwh MA2042.2 yCACCAACC |
| Binding Sites: | UN0367.1.1 MA2042.1.5 / UN0367.1.10 UN0367.1.11 UN0367.1.12 MA2042.1.6 / UN0367.1.13 MA2042.1.7 / UN0367.1.14 UN0367.1.15 MA2042.1.9 / UN0367.1.16 UN0367.1.17 UN0367.1.18 UN0367.1.19 UN0367.1.2 MA2042.1.10 / UN0367.1.20 MA2042.1.1 / UN0367.1.3 UN0367.1.4 UN0367.1.5 MA2042.1.2 / UN0367.1.6 UN0367.1.7 MA2042.1.3 / UN0367.1.8 MA2042.1.4 / UN0367.1.9 MA2042.1.11 MA2042.1.12 MA2042.1.13 MA2042.1.14 MA2042.1.15 MA2042.1.16 MA2042.1.17 MA2042.1.18 MA2042.1.19 MA2042.1.20 MA2042.1.8 MA2042.2.1 MA2042.2.10 / MA2042.2.9 MA2042.2.11 / MA2042.2.18 MA2042.2.12 MA2042.2.13 MA2042.2.14 MA2042.2.15 / MA2042.2.3 MA2042.2.16 MA2042.2.17 MA2042.2.19 MA2042.2.2 MA2042.2.20 MA2042.2.4 MA2042.2.5 MA2042.2.6 MA2042.2.7 MA2042.2.8 |
| Publications: | Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed] |
| Related annotations: | PaperBLAST |
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