Transcription Factor
| Accessions: | Q19720 (JASPAR 2024) |
| Names: | HM38_CAEEL |
| Organisms: | Caenorhabditis elegans |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q19720 |
| Length: | 641 |
| Pfam Domains: | 312-393 CUT domain 428-483 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MESSRTAATSTNGTEKSRRRNTDYLQIDPSSTFINNTGRGFAEELPENFLDTISPHPITP 60 61 SASTSSATSATEEPATSSAPQLASLAPMSMSSEQPSSSFSSASLLSSSYETIKNEPEFSG 120 121 STAGLLSPLHVDSRRRESHDFNTSPYIKEEEDLDGSHLLMGGIRPDTPTNDRSTDLGSIS 180 181 SLLNEDHHTNTIGQSPSPRSTFGSDPTPMIQRQLIKNEDGVSPGSMGFSKNHQGYQKPRN 240 241 GDRMEYEKAPYQRNSRKQKKPLGLLNQALSSVISTPTISSSNIPTPPSAHIAQPRRIYST 300 301 QDSNDPLNAEIGDDIYIDTKDLCKRIAFELKNHSIPQAIFAERILCRSQGTLSDLLRNPK 360 361 PWNKLKSGRETFRRMYNWVAQPLATRLAILDMKTEDVNRASGMSPPTPAQNVRTHRRSTS 420 421 DHDGPVSKRPRLVFTDIQKRTLQAIFKETQRPSREMQQTIAEHLRLDLSTVANFFMNARR 480 481 RSRLGGNIDEPTPFQQVKNISPPPVGDTSDALLNGDDHVPLLNTVMAEMYKEGAIATSNH 540 541 SAEQREMIERGFGVSIPGPSHSGELLNGDSHEDDEELDELNDSELAYEEDVEIGDEEEED 600 601 EEQANGDILPTPKVEELEEKTVIKEEAPDDGEYGATKLAAN |
| Interface Residues: | 348, 349, 351, 353, 354, 431, 472, 473, 476, 477, 480, 481, 483, 485, 493 |
| 3D-footprint Homologues: | 2d5v_B, 2o4a_A, 5hod_A, 1au7_A, 3l1p_A, 3rkq_B, 6fqp_B, 6fqq_E, 4xrm_B, 2r9l_A |
| Binding Motifs: | MA1699.1 mrAAAAATCrATAAwt MA1699.2 AAAAATCrATAAwt |
| Binding Sites: | MA1699.1.1 MA1699.1.10 MA1699.1.11 MA1699.1.12 MA1699.1.13 MA1699.1.14 MA1699.1.15 MA1699.1.16 MA1699.1.17 MA1699.1.18 MA1699.1.19 MA1699.1.2 MA1699.1.20 MA1699.1.3 MA1699.1.4 MA1699.1.5 MA1699.1.6 MA1699.1.7 MA1699.1.8 MA1699.1.9 MA1699.2.1 / MA1699.2.4 / MA1699.2.6 MA1699.2.10 MA1699.2.11 MA1699.2.12 MA1699.2.13 MA1699.2.14 / MA1699.2.15 MA1699.2.16 MA1699.2.17 MA1699.2.18 MA1699.2.19 MA1699.2.2 MA1699.2.20 MA1699.2.3 MA1699.2.5 MA1699.2.7 MA1699.2.8 MA1699.2.9 |
| Publications: | Lannoy V. J., Burglin T. R., Rousseau G. G., Lemaigre F. P. Isoforms of hepatocyte nuclear factor-6 differ in DNA-binding properties, contain a bifunctional homeodomain, and define the new ONECUT class of homeodomain proteins. J. Biol. Chem. 273:13552-13562 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.