Transcription Factor
| Accessions: | OsPTB2 (EEADannot 2023-12-22) |
| Names: | Os05g36120 |
| Organisms: | Oryza sativa |
| Libraries: | EEADannot 2023-12-22 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:polypyrimidine tract-binding |
| Length: | 444 |
| Pfam Domains: | 8-74 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) 22-78 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120-178 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259-324 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) 259-324 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274-329 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369-435 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) 371-435 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383-439 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| Sequence: (in bold interface residues) | 1 MAEPSKVIHIRNVGHEIAEADLLQLLQPFGNVSKIVMLRAKNQALLQMQDLHNSVSALQY 60 61 YSTVQPSVRGRNVYMQFSSHQELTTDQNSHGRNSDQESEPNRILLVTIHHMMYPITVEVL 120 121 HQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHGRNIYDGCCQLDIQYSNL 180 181 SELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYPDPGGLYAFQQPGASYAQMGRAAMITA 240 241 AFGGTLPPGVTGTNERCTLIVSNLNTDKINEDKLFNLFSLYGNIVRIKILRNKPDHALVE 300 301 MADGFQAELAVHYLKGAVLFAKKLEVNYSKYPNITSAPDAHDYTTSSLNRFNSNVIKNYR 360 361 HCCAPTKMIHISALPQEITEDAILNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEATEA 420 421 LVSKHATSLEGNTIRISFSQMQSI |
| Interface Residues: | 109, 134, 145, 169, 174, 176, 178 |
| 3D-footprint Homologues: | 6dg0_A |
| Binding Motifs: | EEAD0077 TCTCTCTCTy |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.