Transcription Factor
| Accessions: | T03685 (AthalianaCistrome v4_May2016), A0JQ66 (JASPAR 2024) |
| Names: | AT1G19040, T03685;, A0JQ66_ARATH, NAC (No Apical Meristem |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:NAC |
| Length: | 172 |
| Pfam Domains: | 6-68 No apical meristem (NAM) protein 113-142 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MSEVLTRGFRFRPADEEVTDYLMRKTQSPEFSCFIKTIDLYDKDPWVLGHVRDPCYNHYE 60 61 WYYFVKKNPLGNEYLDKPRLNGFEHPRLKWDVLKQIHDALSSGQNVPPSVFTYGFRFHPT 120 121 DQELLSLYLTPKAHSPDFSCFIRERESYMPWSHGFLNMLDLLFTRTVNGTTL |
| Interface Residues: | 89, 91, 93, 95, 99, 100, 105, 107, 110 |
| 3D-footprint Homologues: | 4yis_A |
| Binding Motifs: | M0704 wwrCTTGsrgmrCAAG MA1734.1 CTTGykcysCAAGyww |
| Publications: | Zhong R, Lee C, Ye ZH. Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Mol Plant 3:1087-103 (2010). [Pubmed] |
| Related annotations: | PaperBLAST |
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