Transcription Factor
| Accessions: | UP00301A (UniPROBE 20160601) |
| Names: | Gsm1, J0824, Putative 70.4 kDa transcriptional regulatory protein in IME2-MEF2 intergenic region |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Not Av |
| Description: | Putative zinc cluster protein of unknown function; computationally predicted involvement in oxidative phosphorylation, based on patterns of expression and sequence analysis |
| Length: | 618 |
| Pfam Domains: | 18-57 Fungal Zn(2)-Cys(6) binuclear cluster domain |
| Sequence: (in bold interface residues) | 1 MTKKLPSELKQTRKSIQTACEFCHTKHIQCDVGRPCQNCLKRNIGKFCRDKKRKSRKRIE 60 61 KHGTQPYLNLGKRLVIHDVPSKTVSPSSVHLQRDFLSSDQEKPGKTPAHNTNIQYTYNIN 120 121 DNFQSAGSIPRITNFNTNNRQTVLENTSNNISASQAVHLMNDPIIPTVRKSTLNLKSHFL 180 181 EQHKAMQQPLATNCLVATSNVPVHSGMDDSNKSDDDVDDETNIHFDSMWCNDEYMKLKDI 240 241 VDISTPFLPNNSQIFSLQESEYPNPSASTRGNSSLHLTNLLNSTKSVNDQKDSSIGHSTS 300 301 TFNTYDEVVSRPFISLDMLHLNRGANANTHPSHNAKLESECDSSSHSDADLEKHDTDFIS 360 361 PSKFRELVKTPQDLYDNKCLIKPHNYKLAYTKLLTTLRKKFLEGAEIDKSASVKDEHSTQ 420 421 KHNLRYDLEVIIRSILERYAPIFISLTSNMIEEDLLLQEVTLQRALLDLENMAKLVSCTP 480 481 MCIWRRSGEICFVSNEFYSLTGFNKNLLLDRTSFIFEYLDHKSVSNYFQIFNELLAFGYN 540 541 DINKRKKLLMLNACSSTSSKITEGFSFTTDGKAIFTKCNLLLSNGLYLKCACCWTVKRDS 600 601 FNIPILVMGQLLPIFEMD |
| Interface Residues: | 15, 26, 27, 28, 54, 56, 62, 67 |
| 3D-footprint Homologues: | 6o19_A, 1pyi_A, 2er8_C, 3coq_A, 6gys_C, 1zme_D, 7uik_T |
| Binding Motifs: | UP00301A_1 wtyaarwAwCTCCGGArtwkw |
| Binding Sites: | AAACTCCG AACTCCGG AAGCTCCG ACTCCGGA AGCTCCGG AGTTCCGG ATCCCCGG ATCCGGAG ATCTCCGA ATCTCCGG CCCCGGGG CCGGAGAA CCTCCGGA CGGAGATA CGGAGTTA CTCCGGAC CTCCGGAG GCTCCGGA TCCGGAGA CCCCGGAG |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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