Transcription Factor
Accessions: | 1o4x_B (3D-footprint 20231221), 6ht5_D (3D-footprint 20231221) |
Names: | SOX2_HUMAN, Transcription factor SOX-2, SOX2_MOUSE |
Organisms: | Homo sapiens, Mus musculus |
Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
Uniprot: | P48431 |
Length: | 77 |
Pfam Domains: | 2-63 Domain of unknown function (DUF1898) 3-71 HMG (high mobility group) box |
Sequence: (in bold interface residues) | 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60 61 ALHMKEHPDYKYRPRRK |
Interface Residues: | 5, 8, 10, 11, 12, 14, 18, 22, 29, 30, 31, 34, 72, 76 |
3D-footprint Homologues: | 3tmm_A, 4y60_C, 2gzk_A, 1j5n_A, 6jrp_D, 2lef_A, 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 4s2q_D, 1qrv_A, 1hry_A, 3tq6_B, 1ckt_A, 7zie_A |
Binding Motifs: | 1o4x_AB CATTnGCATGACAAAG 1o4x_B gCAAAG 6ht5_DE CATTGTTATGC |
Binding Sites: | 1o4x_C 1o4x_D |
Publications: | Williams D.C, Cai M, Clore G.M. Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex. The Journal of biological chemistry 279:1449-57 (2004). [Pubmed] |
Related annotations: | PaperBLAST |
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