Transcription Factor
Accessions: | ATHB12 (ArabidopsisPBM 20140210), T090235_1.02 (CISBP 1.02), Q9M276 (JASPAR 2024) |
Names: | ATHB-12, ATHB12, T090235_1.02;, ATB12_ARATH, HD-ZIP protein ATHB-12, Homeobox-leucine zipper protein ATHB-12, Homeodomain transcription factor ATHB-12 |
Organisms: | Arabidopsis thaliana |
Libraries: | ArabidopsisPBM 20140210 1, CISBP 1.02 2, JASPAR 2024 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | HD (HD-ZIPI), experiment type:PBM, family:Homeodomain |
Length: | 235 |
Pfam Domains: | 32-83 Homeobox domain 85-128 Homeobox associated leucine zipper |
Sequence: (in bold interface residues) | 1 MEEGDFFNCCFSEISSGMTMNKKKMKKSNNQKRFSEEQIKSLELIFESETRLEPRKKVQV 60 61 ARELGLQPRQVAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQ 120 121 RLNEEMQRPKEEKHHECCGDQGLALSSSTESHNGKSEPEGRLDQGSVLCNDGDYNNNIKT 180 181 EYFGFEEETDHELMNIVEKADDSCLTSSENWGGFNSDSLLDQSSSNYPNWWEFWS |
Interface Residues: | 25, 28, 29, 30, 31, 33, 69, 70, 72, 73, 76, 77, 80, 81, 83, 84, 112 |
3D-footprint Homologues: | 3l1p_A, 3d1n_M, 1nk2_P, 1puf_A, 5zjt_E, 4cyc_A, 5jlw_D, 2ld5_A, 1le8_A, 1ig7_A, 7q3o_C, 2hdd_A, 8g87_X, 2r5y_A, 1zq3_P, 1fjl_B, 6wig_A, 5hod_A, 6a8r_A, 4qtr_D, 3a01_E, 2d5v_B, 7psx_B, 3lnq_A, 1b72_A, 6es3_K, 4xrs_G, 3cmy_A, 2h1k_B, 1jgg_B, 5zfz_A, 3rkq_B, 2lkx_A, 1puf_B, 1du0_A, 5flv_I, 2hos_A, 6m3d_C |
Binding Motifs: | ATHB12 taaTgATTGg M0849_1.02 kwwwwwwwwm MA0950.1 aaTgATTG |
Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.