Transcription Factor
| Accessions: | F4JIF5 (JASPAR 2024), T17119 (AthalianaCistrome v4_May2016) |
| Names: | AtTCX2, Protein SOL2, Protein tesmin/TSO1-like CXC 2, Protein TSO1-like 2, TCX2_ARATH, AT4G14770, T17119;, TCX2 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:CPP |
| Length: | 674 |
| Pfam Domains: | 373-411 Tesmin/TSO1-like CXC domain 458-496 Tesmin/TSO1-like CXC domain |
| Sequence: (in bold interface residues) | 1 MDTPQKSITQIGTPISKSRFEDSPVFNYINSLSPIRPVRSIPNPNQFSSLNFTSPPSVFT 60 61 SPHLTSSHKESRFFKTHNSSSSDPTNSVESQEDESTSHEEVPAEGEDTKGLNIDDCMREE 120 121 ASVETNLDDSVASPCGGNTTDLSLVPYAPTRGEDGSCEDNGMELQKMHDNVQGKTETPDW 180 181 ESLIADASELLIFDSPDASEAFRCFMMQRASNSEARFRNGVEKQTMQHDSNKEPESANAI 240 241 PYEAVSLLHRGIRRRCLDFEMPGNKQTSSENNTAACESSSRCVVPSIGLHLNAILMSSKD 300 301 CKTNVTQDYSCSANIQVGLQRSISTLQDSLDQTENEIREDADQDVPVEPALQELNLSSPK 360 361 KKRVKLDSGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKPIHEDVVLAT 420 421 RKQIESRNPLAFAPKVIRNSDSVQETGDDASKTPASARHKRGCNCKKSNCLKKYCECYQG 480 481 GVGCSINCRCEGCKNAFGRKDGSSIDMEAEQEEENETSEKSRTAKSQQNTEVLMRKDMSS 540 541 ALPTTPTPIYRPELVQLPFSSSKNRMPPPQSLLGGGSSSGIFNSQYLRKPDISLSQSRIE 600 601 KSFETVAVDGAEQMPEILIHSPIPNIKSVSPNGKRVSPPHMESSSSGSILGRRNGGRKLI 660 661 LQSIPSFPSLTPQH |
| Interface Residues: | 491, 494, 495, 498, 499 |
| 3D-footprint Homologues: | 8cef_H |
| Binding Motifs: | M0358 / MA1162.1 wTTyaAAATTyRAAw M0355 TTyaAAATTyRAAw |
| Binding Sites: | MA1162.1.1 / MA1162.1.2 / MA1162.1.3 MA1162.1.10 MA1162.1.11 MA1162.1.12 MA1162.1.13 MA1162.1.14 MA1162.1.15 MA1162.1.16 MA1162.1.17 MA1162.1.18 MA1162.1.19 MA1162.1.20 MA1162.1.4 MA1162.1.5 MA1162.1.6 MA1162.1.7 MA1162.1.8 MA1162.1.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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