Transcription Factor
| Accessions: | UP00232A (UniPROBE 20160601) |
| Names: | Dobox4, Not Available |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Not Av |
| Description: | EST CN720839: E0811A05-5 NIA Mouse four-cell-Embryo cDNA library (Long) Mus musculus cDNA clone NIA:E0811A05 IMAGE:30906628 5-, mRNA sequence |
| Length: | 93 |
| Pfam Domains: | 17-73 Homeobox domain |
| Sequence: (in bold interface residues) | 1 EVPSGSQDSPNDPGTQRKKRNMPSIEQKLVLKEHFDESKYLNKEQCKSLAQKLGMKEKQI 60 61 KTHFKNKRARERRKKSQQPPGKIGSKPHCRPTN |
| Interface Residues: | 17, 18, 19, 20, 22, 47, 58, 59, 61, 62, 65, 66, 69, 70, 72, 73 |
| 3D-footprint Homologues: | 3cmy_A, 1ig7_A, 5zfz_A, 6a8r_A, 1fjl_B, 1puf_A, 2lkx_A, 1nk2_P, 1zq3_P, 6es3_K, 7q3o_C, 4xrs_G, 5flv_I, 2hdd_A, 5zjt_E, 2r5y_A, 2hos_A, 1au7_A, 3rkq_B, 3l1p_A, 1qpi_A, 5jlw_D, 2ld5_A, 7xrc_C, 1e3o_C, 1b72_A, 2h1k_B, 4cyc_A, 1du0_A, 8g87_X, 4qtr_D, 7psx_B, 5hod_A, 3lnq_A, 1o4x_A, 4xrm_B, 3a01_E, 2d5v_B, 6m3d_C |
| Binding Motifs: | UP00232A_1 wwawTAGATACCCywTw |
| Binding Sites: | AAGATACC AGACACCC AGATACCA AGATACCT AGATCCCC AGGGATCA AGGGTATC ATATACCC ATGATCCC GAGATACC GAGATCCC GATACCCC GATCCCCC GGCTCTAA GGGCTCTA GGGTATCA GGTATCTA GGTATTTA GGTGTCTA AGATCCCT |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.