Transcription Factor
| Accessions: | Q9SX97 (JASPAR 2024), T04116 (AthalianaCistrome v4_May2016) |
| Names: | AtDOF1.6, Dof zinc finger protein DOF1.6, DOF16_ARATH, AT1G47655, T04116; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-DOF |
| Length: | 209 |
| Pfam Domains: | 27-83 Dof domain, zinc finger |
| Sequence: (in bold interface residues) | 1 MPSEPNQTRPTRVQPSTAAYPPPNLAEPLPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCR 60 61 RYWTQGGTLRDVPVGGGTRRSSSKRHRSFSTTATSSSSSSSVITTTTQEPATTEASQTKV 120 121 TNLISGHGSFASLLGLGSGNGGLDYGFGYGYGLEEMSIGYLGDSSVGEIPVVDGCGGDTW 180 181 QIGEIEGKSGGDSLIWPGLEISMQTNDVK |
| Interface Residues: | 44 |
| 3D-footprint Homologues: | 5omv_A |
| Binding Motifs: | M0278 / MA1275.1 rsawAAAGTrr M0271 yytTTttCTTTttyt MA1275.2 awAAAGTr |
| Binding Sites: | MA1275.2.8 MA1275.1.1 MA1275.1.10 MA1275.1.11 MA1275.1.12 MA1275.1.13 MA1275.1.14 MA1275.1.15 MA1275.1.16 MA1275.1.17 MA1275.1.18 MA1275.1.19 MA1275.1.2 MA1275.1.20 MA1275.1.3 MA1275.1.4 MA1275.1.5 MA1275.1.6 MA1275.1.7 MA1275.1.8 MA1275.1.9 MA1275.2.1 MA1275.2.10 MA1275.2.11 MA1275.2.12 MA1275.2.13 MA1275.2.14 MA1275.2.15 MA1275.2.16 MA1275.2.17 MA1275.2.18 MA1275.2.19 MA1275.2.2 MA1275.2.20 MA1275.2.3 MA1275.2.4 MA1275.2.5 MA1275.2.6 MA1275.2.7 MA1275.2.9 |
| Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] |
| Related annotations: | PaperBLAST |
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