Transcription Factor
| Accessions: | T057644_1.02 (CISBP 1.02) |
| Names: | ces-1, T057644_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 270 |
| Pfam Domains: | 135-156 C2H2-type zinc finger 135-156 Zinc finger, C2H2 type 136-158 C2H2-type zinc finger 148-175 Zinc-finger double domain 166-188 C2H2-type zinc finger 166-184 C2H2-type zinc finger 191-213 C2H2-type zinc finger 191-213 Zinc finger, C2H2 type 191-213 C2H2-type zinc finger 206-229 Zinc-finger double domain 219-241 C2H2-type zinc finger 219-241 Zinc finger, C2H2 type 219-241 C2H2-type zinc finger 233-257 Zinc-finger double domain 247-260 C2H2-type zinc finger 247-269 Zinc finger, C2H2 type 247-269 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MITTPNISLTPTVAPPVDFPIIGNCDFQAQLWHLMSLHLQMQKSSAASTSSSSSSSTSSE 60 61 NLKKSPSSVQNTSVFSIDNILNSQKVPKLELENDEDVSSSPSPTCSTTGYTLDSLQNLDR 120 121 RSLNKKGPSSHNRCVCDKCGKSYATTSNLSRHKQTHRALDSPHAKQCPHCDRVYVSMPAL 180 181 SMHILTHNASHECNVCGKRFSRLWLLQGHLRSHTGLRPFSCAHCGKSFADRSNLRAHMLT 240 241 HTGDKRFECDKCGRRFALRAYLNRHLETCK |
| Interface Residues: | 114, 116, 120, 144, 145, 147, 148, 151, 175, 176, 177, 178, 179, 181, 182, 184, 185, 188, 191, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 229, 230, 231, 232, 233, 234, 235, 236, 237, 240, 257, 258, 259, 260, 261, 263, 264 |
| 3D-footprint Homologues: | 7w1m_H, 6jnm_A, 5yel_A, 5ei9_F, 7n5w_A, 6blw_A, 5k5l_F, 2gli_A, 8ssu_A, 5kkq_D, 6ml4_A, 2drp_D, 8ssq_A, 8h9h_G, 6e94_A, 7ysf_A, 6a57_A, 2jpa_A, 1ubd_C, 2kmk_A, 1tf3_A, 8cuc_F, 7y3l_A, 3uk3_C, 6u9q_A, 4x9j_A, 1f2i_J, 1tf6_A, 1g2f_F, 5kl3_A, 5k5i_A, 5v3j_F, 4m9v_C, 2lt7_A, 7y3m_I, 2wbs_A, 8gn3_A, 7txc_E, 1llm_D, 5yj3_D |
| Binding Motifs: | M0450_1.02 CAACAGG |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.