Transcription Factor
| Accessions: | T09919 (AthalianaCistrome v4_May2016), O22179 (JASPAR 2024) |
| Names: | AT2G23290, MYB70, T09919;, At2g23280, Myb domain protein 70, MYB family transcription factor, MYB transcription factor, O22179_ARATH, Putative MYB family transcription factor |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:MYB |
| Length: | 309 |
| Pfam Domains: | 13-58 Myb-like DNA-binding domain 16-74 Myb-like DNA-binding domain 68-109 Myb-like DNA-binding domain 68-116 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSGSTRKEMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS 60 61 PEVEHRGFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSGGGGG 120 121 GEEGQSCDFGGNGGYDGNLTDEKPLKRRASGGGGVVVVTALSPTGSDVSEQSQSSGSVLP 180 181 VSSSCHVFKPTARAGGVVIESSSPEEEEKDPMTCLRLSLPWVNESTTPPELFPVKREEEE 240 241 EKEREISGLGGDFMTVVQEMIKTEVRSYMADLQLGNGGGAGGGASSCMVQGTNGRNVGFR 300 301 EFIGLGRIE |
| Interface Residues: | 13, 47, 48, 49, 50, 52, 53, 56, 57, 58, 99, 100, 103, 104, 107, 108, 109 |
| 3D-footprint Homologues: | 3osg_A, 1vfc_A, 2kdz_A, 7xur_A, 1w0t_A, 3zqc_A, 5eyb_B, 6kks_A, 1mse_C, 7c4r_A |
| Binding Motifs: | M0504 tAACsGwawwAAcy MA1393.2 wtAACCGTTww MA1393.3 AACCGTT |
| Binding Sites: | MA1393.2.1 MA1393.2.10 MA1393.2.11 MA1393.2.11 / MA1393.2.12 MA1393.2.12 / MA1393.2.13 MA1393.2.13 / MA1393.2.14 MA1393.2.15 MA1393.2.16 MA1393.2.14 / MA1393.2.17 MA1393.2.18 MA1393.2.15 / MA1393.2.19 MA1393.2.2 MA1393.2.17 / MA1393.2.20 MA1393.2.3 MA1393.2.4 MA1393.2.4 / MA1393.2.5 MA1393.2.6 MA1393.2.7 MA1393.2.8 MA1393.2.9 MA1393.2.16 MA1393.2.18 MA1393.2.19 MA1393.2.20 MA1393.2.5 MA1393.3.5 MA1393.3.1 MA1393.3.10 / MA1393.3.17 MA1393.3.11 / MA1393.3.13 / MA1393.3.14 / MA1393.3.20 / MA1393.3.3 / MA1393.3.4 / MA1393.3.6 / MA1393.3.7 / MA1393.3.9 MA1393.3.12 / MA1393.3.15 / MA1393.3.8 MA1393.3.16 MA1393.3.18 MA1393.3.19 MA1393.3.2 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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