Transcription Factor
| Accessions: | Q80V63 (JASPAR 2024) |
| Names: | EC 2.1.1.-, PR domain zinc finger protein 4, PR domain-containing protein 4, PRDM4_MOUSE |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q80V63 |
| Length: | 803 |
| Pfam Domains: | 611-631 Zinc-finger double domain 621-643 Zinc finger, C2H2 type 621-643 C2H2-type zinc finger 635-660 Zinc-finger double domain 649-671 Zinc finger, C2H2 type 649-669 C2H2-type zinc finger 649-668 Zinc-finger of C2H2 type 663-686 Zinc-finger double domain 678-699 Zinc finger, C2H2 type 678-699 C2H2-type zinc finger 691-715 Zinc-finger double domain 706-727 C2H2-type zinc finger 706-727 Zinc finger, C2H2 type 719-744 Zinc-finger double domain 733-755 C2H2-type zinc finger 733-755 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MNDMNLSPVGMEQLSSSSVSNALPVSGSHLGLAASPSHSAIPAPGLPVAIPNLGPSLSSL 60 61 PSALSLMLPVGIGDRGVMCGLPERNYTLPPPPYPHLESSYFRTILPGILSYLADRPPPQY 120 121 IHPNSINVDGNTALSITNNPSALDPYQANGNVGLELGIVSIDSRSVNTHGAQSLHPNDGH 180 181 EVALDTTITMENVSRVTSPISTDGMAEELTMDGVTGEHPQIPNGSRSHEPLSVDSVSNSL 240 241 TAEAVGHGGVIPIHGNGLELPVVMETDHIANRVNGMSDSTLSDSIHTVAMSTNSVSVALS 300 301 TSHNLASLESVSLHEVGLSLEPVAVSSITQEVAMGTGHVDVSSDSLSFVPSSLQMEDSNS 360 361 NKENMATLFTIWCTLCDRAYPSDCPDHGPVTFVPDTPIESRARLSLPKQLVLRQSIVGTD 420 421 VVGVLPLIGVWTAETIPVRTCFGPLIGQQSHSLEVAEWTDKAVNHVWKIYHTGVLEFCII 480 481 TTDENECNWMMFVRKARNREEQNLVAYPHDGKIYFCTSQDIPPESELLFYYSRNYAQQIG 540 541 VPEHPDVHLCNCGKECSSYSEFKAHLTSHIHNHLPSQGHSSSHGPSHSKERKWKCSMCPQ 600 601 AFISPSKLHVHFMGHMGMKPHKCDFCSKAFSDPSNLRTHLKIHTGQKNYRCTLCDKSFTQ 660 661 KAHLESHMVIHTGEKNLKCDYCDKLFMRRQDLKQHVLIHTQERQIKCPKCDKLFLRTNHL 720 721 KKHLNSHEGKRDYVCEKCTKAYLTKYHLTRHLKTCKEPSSSSSAQEEEDDESEEEDLADS 780 781 MRTEDCRMGSAVYSTDESLSAHK |
| Interface Residues: | 603, 604, 605, 606, 607, 609, 610, 611, 612, 613, 616, 631, 632, 633, 634, 635, 636, 637, 638, 639, 649, 659, 660, 661, 662, 663, 665, 666, 670, 673, 687, 688, 689, 690, 691, 693, 694, 700, 714, 716, 717, 718, 719, 722, 726, 743, 744, 745, 746, 747, 748, 749, 750 |
| 3D-footprint Homologues: | 3uk3_C, 8ssq_A, 7w1m_H, 6u9q_A, 2gli_A, 8ssu_A, 5kkq_D, 1tf6_A, 5v3j_F, 4m9v_C, 7ysf_A, 2jpa_A, 1tf3_A, 8cuc_F, 7y3l_A, 7n5w_A, 4x9j_A, 1f2i_J, 5ei9_F, 1g2f_F, 5kl3_A, 5k5i_A, 6ml4_A, 8h9h_G, 2lt7_A, 6e94_A, 7y3m_I, 5yel_A, 1ubd_C, 2kmk_A, 2drp_D, 6blw_A, 5k5l_F, 8gn3_A, 5yj3_D, 7txc_E, 1llm_D, 6jnm_A, 2wbs_A, 6a57_A |
| Binding Motifs: | MA1647.2 rrgcCTtGAAACygyyr MA1647.3 cCTtGAAACyg |
| Binding Sites: | MA1647.2.1 / MA1647.2.2 MA1647.2.10 / MA1647.2.20 MA1647.2.11 MA1647.2.12 MA1647.2.13 MA1647.2.14 MA1647.2.15 MA1647.2.16 MA1647.2.17 MA1647.2.18 MA1647.2.19 MA1647.2.2 / MA1647.2.6 MA1647.2.20 MA1647.2.3 / MA1647.2.7 MA1647.2.4 / MA1647.2.8 MA1647.2.12 / MA1647.2.5 MA1647.2.6 MA1647.2.13 / MA1647.2.7 MA1647.2.16 / MA1647.2.8 MA1647.2.18 / MA1647.2.9 MA1647.2.1 MA1647.2.10 MA1647.2.11 MA1647.2.14 MA1647.2.15 MA1647.2.17 MA1647.2.19 MA1647.2.3 MA1647.2.4 MA1647.2.5 MA1647.2.9 MA1647.3.1 MA1647.3.10 MA1647.3.11 MA1647.3.12 MA1647.3.13 / MA1647.3.17 MA1647.3.14 MA1647.3.15 MA1647.3.16 / MA1647.3.18 MA1647.3.19 MA1647.3.2 MA1647.3.20 MA1647.3.3 MA1647.3.4 MA1647.3.5 MA1647.3.6 MA1647.3.7 MA1647.3.8 MA1647.3.9 |
| Publications: | Bogani D, Morgan MA, Nelson AC, Costello I, McGouran JF, Kessler BM, Robertson EJ, Bikoff EK. The PR/SET domain zinc finger protein Prdm4 regulates gene expression in embryonic stem cells but plays a nonessential role in the developing mouse embryo. Mol Cell Biol 33:3936-50 (2013). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.