Transcription Factor
| Accessions: | UP00306A (UniPROBE 20160601) |
| Names: | Probable transcriptional regulatory protein YBR150C, Tbs1, YBR1133 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P38114 |
| Description: | Probable Zn-finger protein |
| Length: | 145 |
| Pfam Domains: | 51-85 Fungal Zn(2)-Cys(6) binuclear cluster domain |
| Sequence: (in bold interface residues) | 1 FPPVPTGTIMSPQLSPFPDHRLRHHPLAHMMPADKNFLAYNMESFKSRVTKACDYCRKRK 60 61 IRCTEIEPISGKCRNCIKYNKDCTFHFHEELKRRREEALNNKGNGKSVKKPRLDKENKFK 120 121 DENFDIAVRSRNTSSTDSSPKLHTN |
| Interface Residues: | 46, 47, 57, 59, 60, 61, 62, 78, 79, 89 |
| 3D-footprint Homologues: | 1f5e_P, 1hwt_C, 2er8_C, 3coq_A, 6gys_C, 1zme_D, 7uik_T, 1d66_B |
| Binding Motifs: | UP00306A_1 wkkrkgCGGATCCGcdsswc |
| Binding Sites: | ACGGAACC ACGGACCC ACGGATCC AGGATCCG ATCCGCGG CCGGATCC CGGAACCG CGGACCCG CGGACGGA CGGAGCCG CGGATCCA CGGATCCC CGGATCCG CGGGCCCG GCGGATCC GCGGCTCC TCCGCGGA AGCGGATC CCGTCCGC GCGGGTCC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.