Transcription Factor
Accessions: | T090242_1.02 (CISBP 1.02), P46600 (JASPAR 2024), T18825 (AthalianaCistrome v4_May2016) |
Names: | HAT1, T090242_1.02;, HAT1_ARATH, HD-ZIP protein 1, Homeobox-leucine zipper protein HAT1, Homeodomain-leucine zipper protein HAT1, AT4G17460, T18825; |
Organisms: | Arabidopsis thaliana |
Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | experiment type:PBM, family:Homeodomain, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Homeobox |
Length: | 282 |
Pfam Domains: | 1-97 HD-ZIP protein N terminus 134-188 Homeobox domain 190-233 Homeobox associated leucine zipper |
Sequence: (in bold interface residues) | 1 MMMGKEDLGLSLSLGFAQNHPLQLNLKPTSSPMSNLQMFPWNQTLVSSSDQQKQQFLRKI 60 61 DVNSLPTTVDLEEETGVSSPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLDRSSSRG 120 121 TSDEEEDYGGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWF 180 181 QNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQMSPPTTLL 240 241 MCPSCERVAGPSSSNHNQRSVSLSPWLQMAHGSTFDVMRPRS |
Interface Residues: | 133, 134, 135, 136, 139, 174, 175, 177, 178, 181, 182, 185, 186, 188, 189 |
3D-footprint Homologues: | 1puf_A, 5zfz_A, 1zq3_P, 3lnq_A, 2lkx_A, 1nk2_P, 2ld5_A, 7psx_B, 6a8r_A, 3cmy_A, 2h1k_B, 3d1n_M, 2r5y_A, 1puf_B, 5flv_I, 1b72_A, 5jlw_D, 1ig7_A, 7q3o_C, 1e3o_C, 1le8_A, 1au7_A, 3a01_E, 5hod_A, 1o4x_A, 1du0_A, 4xrm_B, 1jgg_B, 3rkq_B, 6es3_K, 4xrs_G, 2hdd_A, 8g87_X, 4cyc_A, 1fjl_B, 3l1p_A, 5zjt_E, 4qtr_D, 2hos_A, 6m3d_C |
Binding Motifs: | M0851_1.02 syAATCATkr MA1024.1 syAATCATkr M0444 yyAATGATTrrwwaw M0445 cyAATGATTrr MA1024.2 yAATCATk |
Publications: | Sessa G., Morelli G., Ruberti I. The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities. EMBO J. 12:3507-3517 (1993). [Pubmed] |
Related annotations: | PaperBLAST |
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