Transcription Factor
| Accessions: | B4FLJ6 (JASPAR 2024) |
| Names: | B4FLJ6_MAIZE, DNA binding protein, Myb-like transcription factor family protein, MYB-related transcription factor |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | B4FLJ6 |
| Length: | 370 |
| Pfam Domains: | 93-137 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MMRDGVPPSVAGSGGAAGGDGPRRCSQCGHHGHNARTCTARPVKLFGVRIGDKPIRKSAS 60 61 MGNIAHLAAEGSGGREEGYGSDGERPHKKRGEAWTEEEHKKFLLGLNKLGKGDWRGISRK 120 121 YVVSRTPTQVASHAQKYFNRQTNVHRRKRRSSLFDMVIDDPSDQLPLSRSSSQEMEQQHL 180 181 DDPQPVAALPAPVVSPATVVPPVPVEVSASVPSPVQVPVPVSAPVMTSQPMEQDSDTTSS 240 241 IAGEAGTVMPGAMPPYLYPMMIPPPYYHTAFVPMPCYGYVPFYCEPQGAAQAPHEVVKPV 300 301 AVHSTPPLNAKDLYNMSELSLKGDSNANGGVPASPLPPKPIGRPERQSAFHGKGPTPTGG 360 361 SSGGLIPAVK |
| Interface Residues: | 34, 36, 37, 39, 40, 41, 44, 91, 127, 128, 131, 132, 135, 136 |
| 3D-footprint Homologues: | 2jzw_A, 5v3j_F, 1vfc_A, 7d3t_D |
| Binding Motifs: | UN0433.1 awcCTTATCCathy MA2106.1 cCTTATCC |
| Binding Sites: | UN0433.1.1 UN0433.1.10 UN0433.1.11 UN0433.1.12 UN0433.1.13 UN0433.1.14 UN0433.1.15 UN0433.1.16 UN0433.1.17 UN0433.1.18 UN0433.1.19 UN0433.1.2 UN0433.1.20 UN0433.1.3 UN0433.1.4 UN0433.1.5 UN0433.1.6 UN0433.1.7 UN0433.1.8 UN0433.1.9 MA2106.1.17 MA2106.1.12 / MA2106.1.3 / MA2106.1.4 / MA2106.1.7 / MA2106.1.9 MA2106.1.1 / MA2106.1.8 MA2106.1.10 / MA2106.1.11 / MA2106.1.14 MA2106.1.13 / MA2106.1.5 MA2106.1.15 MA2106.1.16 MA2106.1.18 MA2106.1.19 MA2106.1.2 MA2106.1.20 MA2106.1.6 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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