Transcription Factor

						

			
Accessions: T116443_1.02 (CISBP 1.02)

			
Names: PK08316.1, T116443_1.02;
Organisms: Cannabis sativa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Myb/SANT
Length: 515
Pfam Domains:   113-157 Myb-like DNA-binding domain
  116-160 Myb-like DNA-binding domain
Sequence: 
(in bold interface residues)		   1 FLYFSFLFSFPGICIFWENIPRRTLSDQLCLEFSNIFFGGSGGLTKGFGVGTRPIFAAMV   60
  61 VEKQSEGMLSNNSVVAGNCITNGDAKYKSESPLKDLYESAPKVRKPYTITKQREKWTEEE  120
 121 HQKFLEALKLYGRGWRQIEEHVGTKTAVQIRSHAQKYFSKVVRGSSGSVEGCMKPVEIPP  180
 181 PRPKRKPMHPYPRKFVESFNGTSVLNQLERSPSPNFAATDKGIKSPTSVLSSHGSDAVGY  240
 241 DASDHQHKRSPSSTSCTTDMQSISLSPSDKENCYLMSNSSAEEKIPGNHLSSQSNVENVL  300
 301 SVKIEPGCKDTAHNNKEDKLSTSTSFKLFGRTVLLSDLEKESHCSTDDSEALKTDEGQKL  360
 361 DTNLSLGGFGFASNCSPLESSSPSNQTEQQKESSNIVKLNGDAQMLWWSMPQFPFHYQAA  420
 421 YNPSTGPTSTEMEEKEIKKERSCTDSNEGSSSGVETVGNRNIEAFNSFSQEPHRKASVEH  480
 481 CNSRKGFVPYKRCLAERDNHSTATSDRERRKVRVC
Interface Residues: 113, 148, 151, 152, 155, 156, 157
3D-footprint Homologues: 7d3t_D, 3osg_A, 6j5b_C, 1mse_C
Binding Motifs: M1306_1.02 wwaawATCtw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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