Transcription Factor
| Accessions: | T116928_1.02 (CISBP 1.02), Q9S7L2 (JASPAR 2024), T19243 (AthalianaCistrome v4_May2016) |
| Names: | MYB98, T116928_1.02;, AtMYB98, Myb-related protein 98, MYB98_ARATH, Transcription factor MYB98, AT4G18770, T19243; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: DAP-seq, family:MYB |
| Length: | 427 |
| Pfam Domains: | 217-263 Myb-like DNA-binding domain 220-277 Myb-like DNA-binding domain 269-311 Myb-like DNA-binding domain 272-323 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MENFVDENGFASLNQNIFTRDQEHMKEEDFPFEVVDQSKPTSFLQDFHHLDHDHQFDHHH 60 61 HHGSSSSHPLLSVQTTSSCINNAPFEHCSYQENMVDFYETKPNLMNHHHFQAVENSYFTR 120 121 NHHHHQEINLVDEHDDPMDLEQNNMMMMRMIPFDYPPTETFKPMNFVMPDEISCVSADND 180 181 CYRATSFNKTKPFLTRKLSSSSSSSSWKETKKSTLVKGQWTAEEDRVLIQLVEKYGLRKW 240 241 SHIAQVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPG 300 301 RTENSIKNHWNATKRRQFSKRKCRSKYPRPSLLQDYIKSLNMGALMASSVPARGRRRESN 360 361 NKKKDVVVAVEEKKKEEEVYGQDRIVPECVFTDDFGFNEKLLEEGCSIDSLLDDIPQPDI 420 421 DAFVHGL |
| Interface Residues: | 208, 209, 217, 251, 252, 253, 254, 256, 257, 260, 261, 262, 264, 303, 304, 307, 308, 311, 312, 313, 356, 357, 360, 361 |
| 3D-footprint Homologues: | 5eyb_B, 7xur_A, 1vfc_A, 3osg_A, 7c4r_A, 2kdz_A, 6kks_A, 1mse_C, 3zqc_A |
| Binding Motifs: | M1333_1.02 wtmCGTTACrg M0519 / MA1392.1 wwwwwGTAACGkwwr MA1392.2 wwmCGTTACww MA1392.3 wmCGTTAC |
| Binding Sites: | MA1392.3.11 / MA1392.3.14 / MA1392.3.15 / MA1392.3.17 / MA1392.3.9 MA1392.1.1 MA1392.1.10 MA1392.1.11 MA1392.1.12 MA1392.1.13 MA1392.1.14 MA1392.1.15 MA1392.1.16 MA1392.1.17 MA1392.1.18 MA1392.1.19 MA1392.1.2 MA1392.1.20 MA1392.1.3 / MA1392.1.4 MA1392.1.5 MA1392.1.6 MA1392.1.7 MA1392.1.8 MA1392.1.9 MA1392.2.1 MA1392.2.10 / MA1392.2.2 / MA1392.2.7 MA1392.2.11 MA1392.2.12 MA1392.2.13 MA1392.2.14 MA1392.2.15 MA1392.2.16 MA1392.2.17 MA1392.2.18 MA1392.2.19 MA1392.2.20 MA1392.2.3 MA1392.2.4 MA1392.2.5 MA1392.2.6 MA1392.2.8 MA1392.2.9 MA1392.3.1 / MA1392.3.16 / MA1392.3.4 MA1392.3.10 / MA1392.3.2 / MA1392.3.7 MA1392.3.12 MA1392.3.13 MA1392.3.18 / MA1392.3.19 MA1392.3.20 / MA1392.3.5 / MA1392.3.8 MA1392.3.3 MA1392.3.6 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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