Transcription Factor
| Accessions: | T00440 (AthalianaCistrome v4_May2016), Q8L925 (JASPAR 2024) |
| Names: | AT1G69180, CRC, T00440;, CRC_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-YABBY |
| Length: | 181 |
| Pfam Domains: | 16-156 YABBY protein 112-155 Domain of unknown function (DUF1898) |
| Sequence: (in bold interface residues) | 1 MNLEEKPTMTASRASPQAEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLT 60 61 TTPPLQGHVSLTLQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPS 120 121 AYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIPNSPTSITSGGHNMIHGLGFGEK 180 181 K |
| Interface Residues: | 120, 122, 123, 126, 130, 142, 143, 146 |
| 3D-footprint Homologues: | 3tmm_A |
| Binding Motifs: | M0300 wATGATwA M0301 CAAGTCATATTCGACTCCAAAACACTAACC UN0396.1 TwATCATw |
| Related annotations: | PaperBLAST |
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