Transcription Factor

						

			
Accessions: 5uan_B (3D-footprint 20231221)

			
Names: HBV-activated protein, Nuclear receptor subfamily 1 group B member 2, RAR-beta, RAR-epsilon, RARB_HUMAN, Retinoic acid receptor beta
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: P10826
Length: 308
Pfam Domains:      2-69 Zinc finger, C4 type (two domains)
  119-287 Ligand-binding domain of nuclear hormone receptor
Sequence: 
(in bold interface residues)		   1 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQ   60
  61 KCFEVGMSKESVRTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDK  120
 121 FSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFS  180
 181 DGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTK  240
 241 VDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMP  300
 301 PLIQEMLE
Interface Residues: 10, 11, 13, 14, 20, 21, 23, 24, 27, 28, 52, 77
3D-footprint Homologues: 6fbq_A, 7wnh_D, 6l6q_B, 3g9m_B, 1a6y_A, 1lo1_A, 4oln_B, 8hbm_B, 5krb_G, 2han_B, 1kb2_B, 2a66_A, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 1dsz_A, 4umm_E, 3cbb_A, 8cef_H, 4iqr_B, 2han_A, 1hcq_E, 5cbz_E, 4tnt_B, 5e69_A, 4hn5_B, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A
Binding Motifs: 5uan_AB GGtCannGG
5uan_B GGTCA
Binding Sites: 5uan_E
5uan_F
			
Publications: Chandra V, Wu D, Li S, Potluri N, Kim Y, Rastinejad F. The quaternary architecture of RARβ-RXRα heterodimer facilitates domain-domain signal transmission. Nat Commun 8:868 (2017). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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