Transcription Factor
| Accessions: | T24296 (AthalianaCistrome v4_May2016), Q9LUK7 (JASPAR 2024) |
| Names: | AT5G46830, bHLH28, T24296;, AtbHLH28, Basic helix-loop-helix protein 28, BH028_ARATH, bHLH 28, bHLH transcription factor bHLH028, Transcription factor bHLH28, Transcription factor EN 40 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:bHLH |
| Length: | 511 |
| Pfam Domains: | 36-225 bHLH-MYC and R2R3-MYB transcription factors N-terminal 343-388 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MINTDDNLLMIEALLTSDPSPPLLPANLSLETTLPKRLHAVLNGTHEPWSYAIFWKPSYD 60 61 DFSGEAVLKWGDGVYTGGNEEKTRGRLRRKKTILSSPEEKERRSNVIRELNLMISGEAFP 120 121 VVEDDVSDDDDVEVTDMEWFFLVSMTWSFGNGSGLAGKAFASYNPVLVTGSDLIYGSGCD 180 181 RAKQGGDVGLQTILCIPSHNGVLELASTEEIRPNSDLFNRIRFLFGGSKYFSGAPNSNSE 240 241 LFPFQLESSCSSTVTGNPNPSPVYLQNRYNLNFSTSSSTLARAPCGDVLSFGENVKQSFE 300 301 NRNPNTYSDQIQNVVPHATVMLEKKKGKKRGRKPAHGRDKPLNHVEAERMRREKLNHRFY 360 361 ALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVELEKHAIEIQFNELKEIAGQRNAIP 420 421 SVCKYEEKASEMMKIEVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHASISVM 480 481 NDLMIQQANVKMGLRIYKQEELRDLLMSKIS |
| Interface Residues: | 344, 345, 347, 348, 351, 352, 356, 372, 374 |
| 3D-footprint Homologues: | 7ssa_L, 5gnj_I, 6g1l_A, 4h10_A, 7xi3_A, 5i50_B, 7d8t_A, 4zpk_A, 7xq5_A, 5nj8_D, 7f2f_B, 5eyo_A, 5v0l_A, 8osl_P, 1an4_A |
| Binding Motifs: | M0159 awttGTACGGAy UN0359.1 wwwwrTCCGTACaaw UN0359.2 TCCGTACa |
| Binding Sites: | UN0359.2.15 UN0359.1.1 UN0359.1.10 / UN0359.1.7 UN0359.1.11 / UN0359.1.8 UN0359.1.12 / UN0359.1.9 UN0359.1.13 UN0359.1.10 / UN0359.1.14 UN0359.1.11 / UN0359.1.15 UN0359.1.12 / UN0359.1.16 UN0359.1.13 / UN0359.1.17 UN0359.1.18 UN0359.1.14 / UN0359.1.19 UN0359.1.2 UN0359.1.20 UN0359.1.3 UN0359.1.3 / UN0359.1.4 UN0359.1.5 UN0359.1.4 / UN0359.1.6 UN0359.1.7 UN0359.1.5 / UN0359.1.8 UN0359.1.6 / UN0359.1.9 UN0359.1.15 UN0359.1.16 UN0359.1.17 UN0359.1.18 UN0359.1.19 UN0359.1.20 UN0359.2.1 / UN0359.2.18 UN0359.2.10 / UN0359.2.11 / UN0359.2.12 / UN0359.2.13 / UN0359.2.17 / UN0359.2.3 / UN0359.2.5 / UN0359.2.9 UN0359.2.14 / UN0359.2.4 UN0359.2.16 UN0359.2.19 / UN0359.2.2 UN0359.2.20 / UN0359.2.7 UN0359.2.6 UN0359.2.8 |
| Related annotations: | PaperBLAST |
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