Transcription Factor
Accessions: | UP00373A (UniPROBE 20160601) |
Names: | MXL-1 |
Organisms: | Caenorhabditis elegans |
Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
Uniprot: | P90982 |
Description: | MaX-Like: mxl-1 encodes a basic helix-loop-helix protein similar to the vertebrate MAX transcriptional regulators; in vitro, MXL-1 can heterodimerize, and bind an E-box DNA sequence, with MDL-1, a C. elegans MAD-like bHLH protein; mxl-1::gfp reporter fusions are expressed in the posterior intestine and in head and tail neurons. |
Length: | 123 |
Pfam Domains: | 30-80 Helix-loop-helix DNA-binding domain |
Sequence: (in bold interface residues) | 1 SDMSDLEDDQTGHCGSGEHSGPFDPKRHAREQHNALERRRRDNIKDMYTSLREVVPDANG 60 61 ERVQASRAVILKKAIESIEKGQSDSATLSVDVAEQESKNAKLREEIARLKAKKDPSSSQS 120 121 IIQ |
Interface Residues: | 32, 33, 34, 36, 37, 40, 41, 67 |
3D-footprint Homologues: | 1an4_A, 7rcu_E, 5gnj_I, 6g1l_A, 4h10_A, 7ssa_L, 5i50_B, 7d8t_A, 4zpk_A, 5nj8_D, 1am9_A, 7f2f_B, 5eyo_A, 7xi3_A, 5v0l_A, 8osl_P, 7xhv_B, 7xi3_B |
Binding Motifs: | UP00373A_1 awwAarAAACAwws UP00373A_2 twdasCACGTGskawb |
Binding Sites: | AACACGTG ACACGTGC ACACGTGG ACCACGTG AGCACGTG ATCACGTG CACGTGAC CACGTGCA CACGTGCC CACGTGCG CACGTGGA CACGTGGC CACGTGGG CACGTGTC CCACGTGA CCACGTGC CCACGTGG GCACGTGA GCACGTGC TCACGTGA |
Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.