Transcription Factor
| Accessions: | T049163_1.02 (CISBP 1.02) |
| Names: | T049163_1.02;, Zbtb1 |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 316 |
| Pfam Domains: | 206-228 Zinc finger, C2H2 type 206-228 C2H2-type zinc finger 252-272 C2H2-type zinc finger 264-288 Zinc-finger double domain 278-296 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MEPEDIPADDMKDFNIIKVTEKDCNESTDNDELEDEPEEPFYRYYVEEDVGIKKSGRKTL 60 61 KPRMSISVDERGGLENMRPPNNTSPIQEDAENASCELCGLTITEEDLSSHYLAKHIENIC 120 121 ACGKCGQILVKGRQLQEHAQRCGEPQDLTMNGLGNADEKMDMEENPDEQSEIRDMFVEML 180 181 DDFRDNHYQINSIQKKQLFKHSACPFRCPNCGQRFETENLVVEHMSSCLDQDMFKGAIME 240 241 ENERDHRRKHFCNLCGKGFYQRCHLREHYTVHTKEKQFVCQTCGKQFLRERQLRLHNDMH 300 301 KGMASGAVGPSKPLEK |
| Interface Residues: | 178, 180, 181, 184, 192, 206, 216, 217, 218, 219, 220, 221, 223, 237, 239, 240, 241, 242, 243, 244, 245, 248, 260, 261, 262, 263, 264, 266, 267, 268, 288, 289, 290, 291, 292, 293, 294, 295, 296, 299 |
| 3D-footprint Homologues: | 5v3j_F, 5yel_A, 2kmk_A, 7w1m_H, 6ml4_A, 5kkq_D, 1mey_C, 4x9j_A, 5ei9_F, 2jpa_A, 1g2f_F, 2i13_A, 6e94_A, 6wmi_A, 6jnm_A, 8cuc_F, 7y3l_A, 3uk3_C, 1llm_D, 7eyi_G, 1ubd_C, 5kl3_A, 8gn3_A, 7n5w_A, 6blw_A, 1f2i_J, 6u9q_A, 8h9h_G, 7txc_E, 4m9v_C, 1tf6_A, 2lt7_A, 7y3m_I, 1tf3_A, 7ysf_A, 8ssq_A, 5yj3_D, 2wbs_A |
| Binding Motifs: | M0413_1.02 kdTGCGkkry |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.