Transcription Factor
| Accessions: | T090469_1.02 (CISBP 1.02) |
| Names: | ceh-36, T090469_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 257 |
| Pfam Domains: | 56-115 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MTTNFYTAFPTLGYTAYPQFAFAAATTAPSLTSATTSSTTMAPMAPNSESGRRAGRRERT 60 61 SFNRGQLDQLEKVFRETQYPDVHRREALAKAINLPDGRVQVITVWFKNRRAKDRNNKKMD 120 121 GVHPGSTSSRSSNGSPHNESKPDTKSLGIHIPGTPEFNAHSAAKYEANSAVLSQLQQQQQ 180 181 QQLQQPKSELEDSKPLADTKYDSTQSLLPQAQAAAYASYATTAPYPYNYNSYFPSNFYYQ 240 241 QYGSNDYTPNITAYSPL |
| Interface Residues: | 21, 25, 26, 27, 29, 30, 36, 40, 56, 57, 58, 59, 97, 98, 100, 101, 103, 104, 107, 108, 110, 111, 112 |
| 3D-footprint Homologues: | 8bx1_A, 1e3o_C, 1ig7_A, 1puf_A, 8ejp_B, 6a8r_A, 3cmy_A, 8pmf_A, 1fjl_B, 5zfz_A, 3d1n_M, 3lnq_A, 1jgg_B, 1zq3_P, 2lkx_A, 1nk2_P, 2ld5_A, 7q3o_C, 6es3_K, 5zjt_E, 4j19_B, 8ik5_C, 7psx_B, 5hod_A, 3a01_E, 8osb_E, 5jlw_D, 3rkq_B, 8eml_B, 1au7_A, 4xrs_G, 2hdd_A, 4cyc_A, 2r5y_A, 1b72_A, 6m3d_C, 5flv_I, 2hos_A, 9b8u_A, 4qtr_D, 2xsd_C, 7xrc_C, 1du0_A, 1o4x_A, 8g87_X |
| Binding Motifs: | M0862_1.02 yTAATCcs |
| Related annotations: | PaperBLAST |
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