Transcription Factor

						

			
Accessions: T11746 (AthalianaCistrome v4_May2016), Q9LRU5 (JASPAR 2024)

			
Names: AT3G30210, MYB121, T11746;, Myb domain protein 121, MYB transcription factor, MYB-related transcription factor-like protein, Putative transcription factor MYB121, Q9LRU5_ARATH
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: DAP-seq, family:MYB
Length: 276
Pfam Domains:     29-76 Myb-like DNA-binding domain
    32-90 Myb-like DNA-binding domain
   82-126 Myb-like DNA-binding domain
   86-130 Myb-like DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MLDWGVQGHHQKHDHDIYQQQHQQQGCRKGPWTLEEDKLLAEYVTSHGEGRWSTVAKCAG   60
  61 LNRSGKSCRLRWVNYLRPGLKRGQITPQEEGIILELHSLWGNKWSTIARYLPGRTDNEIK  120
 121 NYWRTHYKKNQKSSSKQDKVKKSLSRKQQQVDLKPQPQAQSENHQSQLVSQDHMNIDNDH  180
 181 NIASSLYYPTSVFDDKLYMPQSVATTSSDHSMIDEGHLWGSLWNLDEDDPHSFGGGSGQG  240
 241 TAADIDEKFPDSGIEAPSCGSGDYSYTGVYMGGYIF
Interface Residues: 29, 64, 65, 66, 67, 69, 70, 73, 74, 75, 116, 117, 120, 121, 124, 125, 126
3D-footprint Homologues: 1vfc_A, 3osg_A, 1w0t_A, 2kdz_A, 2qhb_A, 6kks_A, 3zqc_A, 5eyb_B, 1mse_C, 7xur_A
Binding Motifs: M0541 wwwGKTAGGTawra
MA1765.1 tydtACCTAMCwww
MA1765.2 tACCTAMCw
			
Publications: Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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