Transcription Factor
| Accessions: | Q8LBQ7 (JASPAR 2024), T07411 (AthalianaCistrome v4_May2016) |
| Names: | ERF34_ARATH, At2g44940, T07411; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 295 |
| Pfam Domains: | 99-148 AP2 domain |
| Sequence: (in bold interface residues) | 1 MARQINIESSVSQVTFISSAIPAVSSSSSITASASLSSSPTTSSSSSSSTNSNFIEEDNS 60 61 KRKASRRSLSSLVSVEDDDDQNGGGGKRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRK 120 121 KSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLA 180 181 AVNWQDSVNDVSNSEVAEIVEAEPSRAVVAQLFSSDTSTTTTTQSQEYSEASCASTSACT 240 241 DKDSEEEKLFDLPDLFTDENEMMIRNDAFCYYSSTWQLCGADAGFRLEEPFFLSE |
| Interface Residues: | 104, 106, 107, 108, 112, 114, 116, 121, 122, 123, 125 |
| 3D-footprint Homologues: | 5wx9_A, 1gcc_A, 7wq5_A, 3rmp_A, 7et4_D |
| Binding Motifs: | MA1228.1 ryGGCGGCGGmggcggy M0108 / MA1229.1 hwkTGTCGGTGrhrd M0052 wkTGTCGGTGrhr MA1228.2 ryGGCGGCGGmgg MA1229.2 TGTCGGTGr |
| Binding Sites: | MA1228.1.1 MA1228.1.10 MA1228.1.11 MA1228.1.12 MA1228.1.13 MA1228.1.14 MA1228.1.15 MA1228.1.16 MA1228.1.17 MA1228.1.18 MA1228.1.19 MA1228.1.2 MA1228.1.20 MA1228.1.3 MA1228.1.4 MA1228.1.5 MA1228.1.6 MA1228.1.7 MA1228.1.8 MA1228.1.9 MA1228.2.1 MA1228.2.10 MA1228.2.11 MA1228.2.12 MA1228.2.13 MA1228.2.14 MA1228.2.15 MA1228.2.16 MA1228.2.17 MA1228.2.18 MA1228.2.19 MA1228.2.2 MA1228.2.20 MA1228.2.3 MA1228.2.4 MA1228.2.5 MA1228.2.6 MA1228.2.7 MA1228.2.8 MA1228.2.9 |
| Publications: | Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed] Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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